BMRB - Biological Magnetic Resonance Bank

BMRB Query Grid

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Data type(s): Polymer type(s): Polymer join type:

Number of entries returned: 174

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BMRB ID	Entry Title	Carbon shifts	Nitrogen shifts	Phosphorus shifts	Hydrogen shifts	Other shifts	Protein	DNA	RNA	Other
4135	Assignments of a RNA Duplex Including the C-U Mismatch: Unusual Chemical Shifts of a Cytidine Amino Group in the C-U Pair.	0	1	16	163	0			X
4141	vnd/NK-2 Homeodomain DNA Complex Protein 1H, 13C, and 15N Chemical Shifts and HNHA Coupling Constant	291	100	18	904	0	X	X
4172	Response Element of the Orphan Nuclear Receptor Rev-erb Beta	0	0	28	268	0		X
4175	SL3 Hairpin from the Packaging Signal of HIV-1	0	0	19	175	0			X
4235	NMR Solution Structure of [d(GCGAATTCGC)2]	0	0	9	82	0		X
4243	Intercalated d(TCCCGTTTCCA) dimer	0	0	10	84	0		X
4244	NMR Solution Structure of [d(GCGAAT-3'-3'-alphaT-5'-5'-CGC)2]	0	0	9	94	0		X
4361	Structure determination by restrained molecular dynamics using NMR pseudocontact shifts as experimentally determined constraints	80	0	7	152	0		X		X
4362	Structure determination by restrained molecular dynamics using NMR pseudocontact shifts as experimentally determined constraints	96	0	7	160	0		X		X
4415	Solution-state structure of a DNA dodecamer duplex containing a cis-syn thymine cyclobutane dimer.	0	0	22	193	0		X
4416	Solution-State Structure of a DNA Dodecamer Duplex Containing a Cis-Syn Thymine Cyclobutane Dimer.	0	0	22	193	0		X
4547	Solution structure of a DNA.RNA hybrid containing an alpha-anomeric thymidine and polarity reversals: d(ATGG-3'-3'-(alpha-T)-5'-5'-GCTC).r(gagcaccau)	0	0	16	168	0		X	X
4555	31P NMR analysis of the DNA conformation induced by protein binding:SRY-DNA complexes	0	0	26	243	0		X
4556	31P NMR analysis of the DNA conformation induced by protein binding:SRY-DNA complexes	0	0	14	137	0		X
4646	Structural NMR characterization of an 11-mer DNA Duplex Containing a 2'-deoxyaristeromycin 8-oxo-Guanine pair, nonhydrolyzable substrate analog for the DNA repair enzyme MutY	0	0	17	144	0		X
4692	SOLUTION STRUCTURE OF A HUMAN TELOMERE FRAGMENT	0	0	21	245	0		X
4746	Average solution structure of d(TTGGCCAA)2 bound to Chromomycin-A3 and cobalt	80	0	7	127	0		X		X
4753	Average solution structure of d(TTGGCCAA)2 bound to Chromomycin-A3 and zinc	96	0	7	135	0		X		X
4816	Structural Features of an Influenza Virus Promoter and their Implications for Viral RNA Synthesis	39	23	22	224	0			X
4894	RNA recognition by a staufen double-stranded RNA-binding domain	345	93	4	781	0	X		X
5134	Solution Structure of dAAUAA DNA Bulge	0	0	27	248	0		X
5135	Solution Structure of dAATAA DNA Bulge	0	0	26	241	0		X
5245	Heteroduplex of chirally pure R-methylphosphonate/DNA duplex	0	0	13	109	0		X
5256	Solution Structure of the Unmodified Anticodon Stem-loop from E. coli tRNA(Phe)	110	16	17	147	0			X
5259	Solution Structure of the modified Anticodon Stem-loop from E. coli tRNA(Phe)	102	13	14	131	0			X
5282	Refinement of d(GCGAAGC) Hairpin Structure Using One- and Two-Bonds Residual Dipolar Couplings	35	9	6	68	0		X
5528	Solution structure of the complementary RNA promoter of influenza a virus	0	0	13	219	0			X
5553	Solution structure of influenza A virus C4 promoter	29	11	18	202	0			X
5586	Molecular Recognition in Purine-Rich Internal Loops: Thermodynamic, Structural, and Dynamic Consequences of Purine for Adenine Substitutions in 5'(rGGCAAGCCU)2	0	0	8	77	0			X
5587	Molecular Recognition in Purine-Rich Internal Loops: Thermodynamic, Structural, and Dynamic Consequences of Purine for Adenine Substitutions in 5'(rGGCAAGCCU)2	0	0	8	77	0			X
5588	Molecular Recognition in Purine-Rich Internal Loops: Thermodynamic, Structural, and Dynamic Consequences of Purine for Adenine Substitutions in 5'(rGGCAAGCCU)2	0	0	8	80	0			X
5614	Sheared A(anti)-A(anti) Pairs in a Destabilizing 2x2 Internal Loop: The NMR Structure of 5'(rGGCAAGCCU)2	0	0	8	77	0			X
5671	Overall structure and sugar dynamics of a DNA dodecamer from homo and heteronuclear dipolar couplings and 31P chemical shift anisotropy	0	0	22	0	0		X
5681	DIMERIC SOLUTION STRUCTURE OF THE CYCLIC OCTAMER CD(CGCTCATT)	0	0	8	91	0		X
5703	SP phosphorothioate U6 RNA ISL	66	0	1	204	0			X
5705	1H, 13C and 15N resonance assignment of an RNA UUCG Tetraloop	132	47	14	140	0			X
6009	NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+	0	0	14	162	0		X
6062	Assignments for the Negative Regulator of Splicing from Rous Sarcoma Virus residues 907 to 929	153	15	17	198	0			X
6145	The pyrophosphate cage: the structure of the nisin/lipid II complex provides a blueprint for novel antibiotics	0	0	2	62	0	X
6146	The pyrophosphate cage: the structure of the nisin/lipid II complex provides a blueprint for novel antibiotics	73	34	2	264	0	X
6273	1H and 31P chemical shift assignments for the triloop DNA hairpin 5'- GTTCACAGAAC - 3'	0	0	10	101	0		X
6430	1H and 31P chemical shift assignments for HIV-1 integrase inhibitor 93del	0	0	15	148	0		X
6509	Solution Structure of the ScYLV P1-P2 Frameshifting Pseudoknot	217	96	28	263	0			X
6562	A novel cGUUAg tetraloop structure with a conserved yYNMGg-type backbone conformation from cloverleaf 1 of bovine enterovirus 1 RNA	197	93	16	262	0			X
6979	An Alternating Sheared AA Pair and Elements of Stability for a Single Sheared Purine-Purine Pair Flanked by Sheared GA Pairs	0	0	18	168	0			X
7090	Solution structure of a purine rich hexaloop hairpin belonging to PGY/MDR1 mRNA and targeted by antisense oligonucleotides	90	21	17	149	0			X
15033	Dimeric solution structure of the cyclic octamer d(CCGTCCGT)	20	0	4	43	0		X
15360	Solution Structures of a DNA Dodecamer Duplex	0	0	22	266	0		X
15376	SOLUTION STRUCTURE OF A DNA DUPLEX CONTAINING THE UNIVERSAL BASE 5-NITROINDOLE-3-CARBOXAMIDE	0	0	15	170	0		X
15527	1H, 13C, and 31P Chemical Shift Assignments for 14-mer Base Pair Non-self Complementary DNA Duplex ( Mbp1_14) which Contains the Consensus Binding Site of the Yeast Transcription Factor Mbp-1	116	0	25	227	0		X
15571	NMR STRUCTURE OF RNA DUPLEX	124	0	17	182	0			X
15572	NMR STRUCTURE OF RNA DUPLEX CONTAINING SINGLE ADENOSINE BULGE	112	0	19	173	0			X
15780	NMR structure of adenosine bulged RNA duplex with C:G-A triple	52	0	7	72	0			X
15781	NMR structure of uridine bulged RNA duplex	110	0	15	148	0			X
15869	NMR Assignments of HIV-2 TAR RNA	270	47	29	272	0			X
15898	H1, C13, 31P chemical shifts of dGCGAAAGC	42	0	7	72	0		X
16225	Solution Structure of cis-5R,6S-thymine glycol opposite complementary adenine in duplex DNA	0	0	20	231	0		X
16282	d(AGAGCTCT)2 assignments	0	0	7	48	0		X
16286	d(CGAGCTCG)2 assignments	0	0	7	46	0		X
16289	d(GCTATAGC)2 assignments	0	0	7	48	0		X
16609	1H, 13C, 15N chemical shift sssignments of the artificial neomycin-sensing riboswitch in complex with ribostamycin	180	53	9	248	0			X
16714	Structure of a human Xist RNA A-repeat AUCG tetraloop hairpin essential for X-inactivation	104	45	13	120	0			X
16950	The Structure of RNA Internal Loops with Tandem AG Pairs: 5'AAGU/3'UGAA	29	4	10	104	0			X
16951	The Structure of RNA Internal Loops with Tandem AG Pairs: 5'GAGC/3'CGAG	50	0	10	107	0			X
16952	The Structure of RNA Internal Loops with Tandem AG Pairs: 5'UAGA/3'AGAU	29	5	10	95	0			X
16953	The Structure of RNA Internal Loops with Tandem AG Pairs: 5'UAGG/3'GGAU	19	0	8	81	0			X
17129	Chemical shifts of the 25-mer oligonucleotide encompassing the variable region of a MUC1 DNA aptamer.	139	0	25	254	0		X
17309	Solution structure of coronaviral stem-loop 2 (SL2)	35	0	4	123	0			X
17351	Ribonucleotide Perturbation of DNA Structure: Solution Structure of [d(CGC)r(G)d(AATTCGCG)]2	0	0	11	127	0				X
17406	Structure of a 4X4 Nucleotide RNA Internal Loop from an R2 Retrotransposon	24	8	20	156	0			X
17517	Pseudouridine_ASL_Tyr	35	0	16	80	0			X
17520	Unmodified_ASL_Tyr	116	41	16	136	0			X
17535	DNA / RNA Hybrid containing a central stereo specific Rp borano phosphate linkage	36	0	16	130	1		X	X
17887	DNA sequence context conceals alpha anomeric lesion	56	0	18	177	0		X
17941	the structure of subdomain IV-B from the CVB-3 IRES	179	47	2	243	0			X
18040	DNA TT mismatch and 2,7-BisNP	0	0	20	202	0		X
18050	Structure of a bis-naphthalene bound to a thymine-thymine DNA mismatch	0	0	9	179	0		X
18239	Pseudo-triloop from the sub-genomic promoter of Brome Mosaic Virus	0	0	15	105	0			X
18240	Mutant of the sub-genomic promoter from Brome Mosaic Virus	0	0	14	100	0			X
18279	human CEB25 minisatellite G-quadruplex	56	0	25	233	0		X
18656	Major Conformation of the Internal Loop 5'GAGU/3'UGAG	13	5	10	164	0			X
18973	DNA containing a cluster of 8-oxo-guanine and abasic site lesion : alpha anomer	0	0	20	179	0		X
18979	DNA containing a cluster of 8-oxo-guanine and abasic site lesion : beta anomer	0	0	20	179	0		X
18981	DNA containing a cluster of 8-oxo-guanine and THF lesion	0	0	21	185	0		X
18984	DNA containing a cluster of 8-oxo-guanine and abasic site lesion : alpha anomer (AP6, 8OG 14)	0	0	20	182	0		X
18985	DNA containing a cluster of 8-oxo-guanine and abasic site lesion : beta anomer (6AP, 8OG14)	0	0	20	182	0		X
19158	Solution NMR structure of the d(GGGTTGGGTTTTGGGTGGG) quadruplex in sodium conditions	0	0	18	349	0		X
19159	Solution NMR structure of the d(GGGGTTGGGGTTTTGGGGAAGGGG) quadruplex in sodium conditions	0	0	22	428	0		X
19222	NMR Studies of DNA Support the Role of Pre-Existing Minor Groove Variations in Nucleosome Indirect Readout	0	0	264	0	0		X
19290	NMR structure of human TDP-43 tandem RRMs in complex with UG-rich RNA	864	182	11	1327	0	X		X
19387	Solution structure of an intramolecular (3+1) human telomeric G-quadruplex bound to a telomestatin derivative	0	0	23	210	0		X
19440	NMR structure of DNA duplex	0	0	14	160	0		X
19441	NMR structure of spermine modified DNA duplex	0	0	14	164	0		X
19734	Complete chemical shift assignment of the ssDNA in the filamentous bacteriophage fd report on its conformation and on its interface with the capsid shell	39	0	5	0	0	X	X
19784	Solution structure of the G-triplex truncated-TBA	66	0	9	119	0		X
25220	N6-Methyladenosine RNA	28	0	9	83	0			X
25291	RNA duplex	48	0	8	77	0			X
25414	Structural features of a 3' splice site influenza A: 11-nt hairpin	0	0	10	97	0			X
25415	Structural features of a 3' splice site influenza A: 19-nt duplex	0	0	14	140	0			X
25526	Re-refined solution NMR Structure of the 27 nucleotide engineered neomycin sensing riboswitch RNA-ribostamycin complex	180	27	8	205	0			X
25534	RNA structure determination by solid-state NMR spectroscopy	173	49	9	0	0			X
25603	Structure of murine tumour necrosis factor alpha CDE RNA	148	33	21	185	0			X
25604	Solution structure of a double base-pair inversion mutant of murine tumour necrosis factor alpha CDE-23 RNA	151	0	22	180	0			X
25661	1H, 13C, and 15N chemical shift assignments of a the GTP class II RNA aptamer in complex with GTP	259	112	7	298	0			X
25669	Solution structure of a self complementary Xylonucleic Acid duplex	72	0	7	74	0			X
25723	Universal Base oligonucleotide structure	0	0	16	136	0		X
25724	Universal base control oligonucleotide structure	0	0	16	133	0		X
26568	The structure of the SOLE element of oskar mRNA	213	38	30	251	0			X
26842	NMR resonance assignments for the tetramethylrhodamine binding RNA aptamer 3 in complex with the ligand 5-carboxy-tetramethylrhodamine	382	157	3	415	0			X
27769	GA-branchsite-containing RNA duplex with unmodified U2 snRNA site	36	0	19	182	0			X
27770	GA-branchsite-containing RNA duplex with pseudouridine-modified U2 snRNA site	35	0	19	186	0			X
30038	Solution Structure of DNA Dodecamer with 8-oxoguanine at 4th Position	0	0	14	186	0		X
30044	Solution Structure of DNA Dodecamer with 8-oxoguanine at 10th Position	0	0	14	186	0		X
30052	NMR solution structure of [Rp, Rp]-PT dsDNA	0	0	18	144	0		X
30053	Solution NMR structure of PT-free dsDNA from Streptomyces lividans	0	0	16	156	0		X
30054	NMR solution structure of [Sp, Sp]-PT dsDNA	0	0	18	112	0		X
30105	Structural impact of single ribonucleotides in DNA	0	0	16	128	0		X		X
30111	Structural impact of single ribonucleotides in DNA	0	0	16	129	0		X
30112	Structural impact of single ribonucleotides in DNA	0	0	16	129	0		X
30113	Structural impact of single ribonucleotides in DNA	0	0	16	128	0		X		X
30114	Structural impact of single ribonucleotides in DNA	0	0	16	128	0		X		X
30115	Structural impact of single ribonucleotides in DNA	0	0	16	128	0		X		X
30116	Structural impact of single ribonucleotides in DNA	0	0	16	128	0		X		X
30117	Structural impact of single ribonucleotides in DNA	0	0	16	128	0		X		X
30224	Structure Effects of the Four-Adenine Loop of the Coliphage GA Replicase RNA Operator	158	49	21	196	0			X
30253	Insights into Watson-Crick/Hoogsteen Breathing Dynamics and Damage Repair from the Solution Structure and Dynamic Ensemble of DNA Duplexes containing m1A - A2-DNA structure	113	10	22	155	0		X
30254	Insights into Watson-Crick/Hoogsteen Breathing Dynamics and Damage Repair from the Solution Structure and Dynamic Ensemble of DNA Duplexes containing m1A - A6-DNA structure	115	10	22	161	0		X
30255	Insights into Watson-Crick/Hoogsteen Breathing Dynamics and Damage Repair from the Solution Structure and Dynamic Ensemble of DNA Duplexes containing m1A - A6-DNAm1A16 structure	115	10	20	160	0		X
30268	Structure of a GA Rich 8x8 Nucleotide RNA Internal Loop	0	0	13	152	0			X
30473	NMR structure for Sp1 transcription factor duplex 5'-d(GGGGCGGGG)	70	0	10	164	0		X
30546	RNA Duplex containing the internal loop 5'-GCUU/3'-UUCG	24	0	7	148	0			X
30547	RNA Duplex containing the internal loop 5'-GCAU/3'-UACG	18	0	5	88	0			X
30940	Hairpin near 3'-Splice Site of Influenza A Segment 7 Bound to 5-nt Oligonucleotide	0	0	12	177	0		X	X
31099	FARFAR-NMR ensemble of HIV-1 TAR with apical loop capturing ground and excited conformational states	191	59	29	224	0			X
34157	NtMe polyamide in complex with 5'CGATGTACATCG3'- hairpin polyamides studies	107	0	22	353	0		X
34158	NtiPr polyamide in complex with 5'CGATGTACTACG3	105	0	22	304	0		X
34159	Im polyamide in complex with 5'CGATGTACATCG3'- hairpin polyamides studies	112	0	22	350	0		X
34265	Solution structure of the r(UGGUGGU)4 RNA quadruplex	44	0	7	169	0			X
34321	NMR solution structure of the C/D box snoRNA U14	207	77	11	242	0			X
34323	Structure of the RNA duplex containing pseudouridine residue (5'-Cp(PSU)pG-3' sequence context)	90	0	16	155	0			X
34324	Structure of the RNA duplex containing pseudouridine residue (5'-Gp(PSU)pC-3' sequence context)	83	0	16	155	0			X
34328	Dodecamer DNA containing the synthetic base pair P-Z	72	0	11	98	0		X
34436	Guanine-rich oligonucleotide with 5'-GC end form G-quadruplex with A(GGGG)A hexad, GCGC- and G-quartets and two symmetric GG and AA base pairs	0	0	11	115	0		X
34438	Guanine-rich oligonucleotide with 5'- and 3'-GC ends form G-quadruplex with A(GGGG)A hexad, GCGC- and G-quartets and two symmetric GG and AA base pair	0	0	13	132	0		X
34580	Single modified phosphoryl guanidine DNA duplex, Sp diastereomer	11	0	16	258	0		X
34581	DNA duplex with phosphoryl guanidine moiety, Rp-diastereomer	6	0	17	212	0		X
34685	Solution structure of a lanthanide-binding DNA aptamer	0	0	79	779	0		X
34777	Structure of a symmetrical internal loop motif with three consecutive U:U mismatches from stem-loop 1 in the 3'-UTR of the SARS-CoV2 genomic RNA	88	23	10	128	0			X
34796	Integrated NMR/MD structure determination of a dynamic and thermodynamically stable CUUG RNA tetraloop	93	10	13	122	0			X
34805	Solution structure of the 8-17 DNAzyme in presence of Zn2+	0	0	32	302	0		X
34914	Single acyclic phosphonate nucleotide (S)-ZNA modification on DNA hairpin	78	0	9	103	0		X
34915	Single acyclic phosphonate nucleotide (R)-ZNA modification on DNA duplex	96	0	14	242	0		X
34942	Solution structure of a silver ion mediated DNA duplex with universal 7-deazapurine substitutions	0	0	11	89	0		X
36168	Solution structure of G-quadruplex formed in vegfr-2 proximal promoter sequence	11	0	24	236	0		X
50242	Chemical shifts for [r(UGGUGG)d(U)]4 G-quadruplex	0	0	6	52	0			X
50244	[r(UGGUGG)(2'OMeU)]4 G-quadruplex	0	0	7	50	0			X
50245	[r(UGGUGGC)]4 G-quadruplex	0	0	7	51	0			X
50246	[r(UGGUGGT)]4 G-quadruplex	0	0	7	50	0			X
50247	[r(UGGUGG)d(T)]4 G-quadruplex	0	0	7	51	0			X
50248	[r(UGGUGG)(LNA-T)]4 G-quadruplex	0	0	7	49	0			X
50249	[r(UGGUGGPs)]4 G-quadruplex	0	0	7	49	0			X
50610	T9 DNA	0	0	88	84	0		X
50611	U9 DNA	0	0	88	164	0		X
50613	U8 DNA	0	0	88	160	0		X
50614	dhU3 DNA	0	0	77	164	0		X
50615	DDD DNA	0	0	77	164	0		X
50616	A3T3 DNA	0	0	77	78	0		X
50617	MeC9 DNA	0	0	77	78	0		X
50760	1H, 13C,15N and 31P chemical shift assignment of the stem-loop 4 from the 5'-UTR of SARS-CoV-2	204	69	24	228	0			X
51137	Assignment of base 15N and 1H chemical shifts for <5_SL5C>	80	4	11	115	0			X
51138	Assignment of base 15N and 1H chemical shifts for <5_SL5B_GC>	284	133	19	336	0			X
51869	Resonance assignment of the preQ1 riboswitch from Thermotoga tengcongensis	296	121	31	291	0			X
52045	1H, 13C, 15N and 31P chemical shift assignment of poly(UG) fold RNA	194	72	23	222	0			X
52355	8-17 DNAzyme in presence of various metal ions	0	0	180	2071	0		X