BMRB Entry 4172

Name: Response Element of the Orphan Nuclear Receptor Rev-erb Beta
Published: 2000-12-14

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PDB ID: 1bn9
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR4172
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Response Element of the Orphan Nuclear Receptor Rev-erb Beta

Deposition date:

1998-08-03

Original release date:

2000-12-14

Authors:

Castagne, C.; Terenzi, H.; Zakin, M.; Delepierre, M.

Citation:

Citation: Castagne, C.; Terenzi, H.; Zakin, M.; Delepierre, M.. "Solution Structure of the Orphan Nuclear Receptor Rev-erb Beta Response Element by 1H, 31P NMR and Molecular Simulation" Biochimie 82, 739-748 (2000).

Assembly members:

Assembly members:
Rev-RE subunit 1, polymer, 15 residues, Formula weight is not available
Rev-RE subunit 2, polymer, 15 residues, Formula weight is not available

Natural source:

Natural source: Common Name: mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus

Experimental source:

Experimental source: Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Rev-RE subunit 1: TAGAATGTAGGTCAG
Rev-RE subunit 2: CTGACCTACATTCTA

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_one
- assigned_chemical_shifts_two

Data type	Count
1H chemical shifts	268
31P chemical shifts	28

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Rev-RE subunit 1	1
2	Rev-RE subunit 2	2

Entities:

Entity 1, Rev-RE subunit 1 15 residues - Formula weight is not available

1

DT

DA

DG

DA

DT

DG

DT

DA

DG

2

DG

DT

DC

DA

DG

Entity 2, Rev-RE subunit 2 15 residues - Formula weight is not available

1

DC

DT

DG

DA

DC

DT

DA

DC

DA

2

DT

DC

DT

DA

Samples:

sample_one: Rev-RE subunit 1 3.6 mM; Rev-RE subunit 2 3.6 mM

sample_conditions_one: pH: 7.0; temperature: 303 K

Experiments:

Name	Sample	Sample state	Sample conditions
NOESY TOCSY	sample_one	not available	sample_conditions_one
31P-1H hcosyinv and hsqc-tocsy	sample_one	not available	sample_conditions_one

Software:

FELIX v95.0 - cross-peaks volume calculation

JUMNA v8.0 - molecular simulation nucleic acid minimization

NMR spectrometers:

VARIAN UNITY 500 MHz