BMRB Entry 6979

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PDB ID: 2dd2
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR6979
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

An Alternating Sheared AA Pair and Elements of Stability for a Single Sheared Purine-Purine Pair Flanked by Sheared GA Pairs

Deposition date:

2006-02-09

Original release date:

2006-06-26

Authors:

Chen, G.; Kennedy, S.; Krugh, T.; Turner, D.

Citation:

Citation: Chen, Gang; Kennedy, Scott; Qiao, Jing; Krugh, Thomas; Turner, Douglas. "An Alternating Sheared AA Pair and Elements of Stability for a Single Sheared Purine-Purine Pair Flanked by Sheared GA Pairs in RNA" Biochemistry 45, 6889-6903 (2006).

Assembly members:

Assembly members:
GGUGAAGGCU, polymer, 10 residues, Formula weight is not available
GCCGAAGCCP, polymer, 10 residues, Formula weight is not available

Natural source:

Natural source: Common Name: not available Taxonomy ID: not available Superkingdom: not available Kingdom: not available Genus/species: not available not available

Experimental source:

Experimental source: Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
GGUGAAGGCU: GGUGAAGGCU
GCCGAAGCCP: GCCGAAGCCX

Data sets:

assigned_chemical_shifts
- chemical_shift_set_1
- chemical_shift_set_2

Data type	Count
1H chemical shifts	168
31P chemical shifts	18

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	5'-R(GPGPUPGPAPAPGPGPCPU)-3'	1
2	5'-R(GPCPCPGPAPAPGPCPCP(PR5))-3'	2

Entities:

Entity 1, 5'-R(*GP*GP*UP*GP*AP*AP*GP*GP*CP*U)-3' 10 residues - Formula weight is not available

1

G

U

G

A

G

C

U

Entity 2, 5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(PR5))-3' 10 residues - Formula weight is not available

1

G

C

G

A

G

C

P5P

Samples:

sample_1: GGUGAAGGCU 2 mM; GCCGAAGCCP 2 mM; NaCl 80 mM; sodium phosphate 10 mM; Na2EDTA 0.5 mM

sample_cond_1: pH: 5.1; temperature: 303 K

sample_cond_2: pH: 5.1; temperature: 278 K

Experiments:

Name	Sample	Sample state	Sample conditions
not available	sample_1	not available	not available

Software:

FELIX -

DISCOVER -

VNMR -

NMR spectrometers:

Varian INOVA 600 MHz
Varian INOVA 500 MHz