BMRB Entry 19441

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PDB ID: 2mcj
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR19441
MolProbity Validation Chart

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Title:
NMR structure of spermine modified DNA duplex
Deposition date:
2013-08-20
Original release date:
2014-01-21
Authors:
Brzezinska, Jolanta; Gdaniec, Zofia; Popenda, Lukasz; Markiewicz, Wojciech
Citation:

Citation: Brzezinska, Jolanta; Gdaniec, Zofia; Popenda, Lukasz; Markiewicz, Wojciech. "Polyaminooligonucleotide: NMR structure of duplex DNA containing a nucleoside with spermine residue, N-[4,9,13-triazatridecan-1-yl]-2'-deoxycytidine"  Biochim. Biophys. Acta 1840, 1163-1170 (2014).
PubMed: 24361616

Assembly members:

Assembly members:
DNA_(5'-D(*GP*TP*CP*GP*GP*CP*TP*G)-3'), polymer, 8 residues, 2458.635 Da.
DNA_(5'-D(*CP*AP*GP*(N4S)P*CP*GP*AP*C)-3'), polymer, 8 residues, 2107.429 Da.

Natural source:

Natural source:   Common Name: not available   Taxonomy ID: not available   Superkingdom: not available   Kingdom: not available   Genus/species: not available not available

Experimental source:

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
DNA_(5'-D(*GP*TP*CP*GP*GP*CP*TP*G)-3'): GTCGGCTG
DNA_(5'-D(*CP*AP*GP*(N4S)P*CP*GP*AP*C)-3'): CAGXCGAC

Data sets:
Data typeCount
1H chemical shifts164
31P chemical shifts14

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1DNA (5'-D(*GP*TP*CP*GP*GP*CP*TP*G)-3')1
2DNA (5'-D(*CP*AP*GP*(N4S)P*CP*GP*AP*C)-3')2

Entities:

Entity 1, DNA (5'-D(*GP*TP*CP*GP*GP*CP*TP*G)-3') 8 residues - 2458.635 Da.

1   DGDTDCDGDGDCDTDG

Entity 2, DNA (5'-D(*CP*AP*GP*(N4S)P*CP*GP*AP*C)-3') 8 residues - 2107.429 Da.

1   DCDADGN4SDCDGDADC