BMRB Entry 7090

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR7090

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of a purine rich hexaloop hairpin belonging to PGY/MDR1 mRNA and targeted by antisense oligonucleotides

Deposition date:

2006-04-27

Original release date:

2007-04-27

Authors:

Joli, Flore; Bouchemal, Nadia; Laigle, Alain; Hartmann, Brigitte; Hantz, Edith

Citation:

Citation: Joli, Flore; Bouchemal, Nadia; Laigle, Alain; Hartmann, Brigitte; Hantz, Edith. "Solution structure of a purine rich hexaloop hairpin belonging to PGY/MDR1 mRNA and targeted by antisense oligonucleotides" Nucleic Acids Res. 34, 5740-5751 (2006).
PubMed: 17041234

Assembly members:

Assembly members:
18mer hairpin hexaloop, polymer, 18 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: obtained from a vendor

Entity Sequences (FASTA):

Entity Sequences (FASTA):
18mer hairpin hexaloop: GAGGUCGGGAUGGAUCUC

Data sets:

assigned_chemical_shifts
- chem_shift_list_1

Data type	Count
13C chemical shifts	90
15N chemical shifts	21
1H chemical shifts	149
31P chemical shifts	17

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	18 mer hairpin hexaloop	1

Entities:

Entity 1, 18 mer hairpin hexaloop 18 residues - Formula weight is not available

1

G

A

G

U

C

G

A

2

U

G

A

U

C

U

C

Samples:

sample_1: 18mer hairpin hexaloop, [U-98% 13C; U-98% 15N], 1 mM; phosphate buffer 10 mM; EDTA 0.01 mM

conditions_1: ionic strength: 10 mM; pH: 6.8

Experiments:

Name	Sample	Sample state	Sample conditions
1H15N HSQC	sample_1	not available	conditions_1
1H13C HSQC	sample_1	not available	conditions_1
1H1H13C HCCH COSY	sample_1	not available	conditions_1
1H1H13C NOESY HSQC	sample_1	not available	conditions_1
HNN COSY	sample_1	not available	conditions_1
1H1H13C HSCQ TOCSY	sample_1	not available	conditions_1
HCN TROSY	sample_1	not available	conditions_1
CU HNCCCH	sample_1	not available	conditions_1
GA HNC TOCSY CH	sample_1	not available	conditions_1

Software:

No software information available

NMR spectrometers:

Varian UnityInova 500 MHz