BMRB Entry 25723

Title:
Universal Base oligonucleotide structure
Deposition date:
2015-07-23
Original release date:
2016-09-06
Authors:
Spring-Connell, Alexander; Evich, Marina; Seela, Frank; Germann, Markus
Citation:

Citation: Spring-Connell, Alexander; Evich, Marina; Debelak, Harald; Seela, Frank; Germann, Markus. "Using NMR and molecular dynamics to link structure and dynamics effects of the universal base 8-aza, 7-deaza, N8 linked adenosine analog"  Nucleic Acids Res. 44, 8576-8587 (2016).
PubMed: 27566150

Assembly members:

Assembly members:
DNA_(5'-D(*AP*TP*GP*GP*(UB)P*GP*CP*TP*C)-3'), polymer, 9 residues, 2423.621 Da.
DNA_(5'-D(*GP*AP*GP*CP*TP*CP*CP*AP*T)-3'), polymer, 9 residues, 2715.821 Da.

Natural source:

Natural source:   Common Name: not available   Taxonomy ID: not available   Superkingdom: not available   Kingdom: not available   Genus/species: not available not available

Experimental source:

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
DNA_(5'-D(*AP*TP*GP*GP*(UB)P*GP*CP*TP*C)-3'): ATGGXGCTC
DNA_(5'-D(*GP*AP*GP*CP*TP*CP*CP*AP*T)-3'): GAGCTCCAT

Data sets:
Data typeCount
1H chemical shifts136
31P chemical shifts16

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1DNA (5'-D(*AP*TP*GP*GP*(UB)P*GP*CP*TP*C)-3')1
2DNA (5'-D(*GP*AP*GP*CP*TP*CP*CP*AP*T)-3')2

Entities:

Entity 1, DNA (5'-D(*AP*TP*GP*GP*(UB)P*GP*CP*TP*C)-3') 9 residues - 2423.621 Da.

1   DADTDGDG4ENDGDCDTDC

Entity 2, DNA (5'-D(*GP*AP*GP*CP*TP*CP*CP*AP*T)-3') 9 residues - 2715.821 Da.

1   DGDADGDCDTDCDCDADT