BMRB Entry 6562

Click here to enlarge.

PDB ID: 1z30
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR6562
MolProbity Validation Chart

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title:

A novel cGUUAg tetraloop structure with a conserved yYNMGg-type backbone conformation from cloverleaf 1 of bovine enterovirus 1 RNA

Deposition date:

2005-03-18

Original release date:

2005-04-19

Authors:

Ihle, Yvonne; Ohlenschlager, Oliver; Duchardt, Elke; Ramachandran, Ramadurai; Gorlach, Matthias

Citation:

Citation: Ihle, Yvonne; Ohlenschlager, Oliver; Hafner, Sabine; Duchardt, Elke; Zacharias, Martin; Seitz, Simone; Zell, Roland; Ramachandran, Ramadurai; Gorlach, Matthias. "A novel cGUUAg tetraloop structure with a conserved yYNMGg-type backbone conformation from cloverleaf 1 of bovine enterovirus 1 RNA" Nucleic Acids Res. 33, 2003-2011 (2005).
PubMed: 15814817

Assembly members:

Assembly members:
D-loop from cloverleaf 1 of bovine enterovirus 1 RNA, polymer, 18 residues, Formula weight is not available

Natural source:

Natural source: Common Name: bovine enterovirus 1 Taxonomy ID: 12064 Superkingdom: Viruses Kingdom: not available Genus/species: Enterovirus bovine enterovirus 1

Experimental source:

Experimental source: Production method: enzymatic semisynthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
D-loop from cloverleaf 1 of bovine enterovirus 1 RNA: GGCGUUCGUUAGAACGUC

Data sets:

assigned_chemical_shifts
- chemical_shift_set_25C
- chemical_shift_set_10C
coupling_constants
- 3JH1H2_values

Data type	Count
13C chemical shifts	197
15N chemical shifts	93
31P chemical shifts	16
coupling constants	17

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	BEVSLDap	1

Entities:

Entity 1, BEVSLDap 18 residues - Formula weight is not available

1

G

C

G

U

C

G

U

2

A

G

A

C

G

U

C

BMRB Entry 6562

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Name	Sample	Sample state	Sample conditions
(1H,15N)-HSQC	not available	not available	not available
(1H,15N)-CPMG-NOESY	not available	not available	not available
(1H,1H)-H5(C5C4N)H	not available	not available	not available
(1H,1H)-HCCNH-TOCSY	not available	not available	not available
(1H,1H)-HCCH-TOCSY (A)	not available	not available	not available
(1H,1H)-HCCH-COSY	not available	not available	not available
(1H,15N)-2bond-HSQC	not available	not available	not available
(1H,13C)-H(N)CO	not available	not available	not available
(1H,13C)-HSQC	not available	not available	not available
3D (1H,1H,13C)-HCCH-COSY	not available	not available	not available
3D (1H,1H,13C)-HCCH-TOCSY	not available	not available	not available
(1H,15N)-HCN	not available	not available	not available
3D (1H,1H,13C)-NOESY-HSQC	not available	not available	not available
(1H,31P)-HCP-CCH-TOCSY	not available	not available	not available
(1H,1H)-NOESY	not available	not available	not available
HNN-COSY	not available	not available	not available
(1H,13C)-HCCH-E.COSY	not available	not available	not available