BMRB Entry 15470

Name: Resonance assignment of the Calmodulin-Munc13-1 peptide complex
Published: 2009-12-21

Chem Shift validation: AVS_full, SPARTA
BMRB Entry DOI: doi:10.13018/BMR15470

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Resonance assignment of the Calmodulin-Munc13-1 peptide complex

Deposition date:

2007-09-14

Original release date:

2009-12-21

Authors:

Rodriguez-Castaneda, Fernando; Carlomagno, Teresa; Brose, Nils; Griesinger, Christian

Citation:

Citation: Rodriguez-Castaneda, Fernando; Coudevylle, Nicolas; Becker, Stefan; Brose, Nils; Carlomagno, Teresa; Griesinger, Christian. "(1)H, (13)C and (15)N resonance assignments of the Calmodulin-Munc13-1 peptide complex." Biomol. NMR assignments 4, 45-48 (2009).
PubMed: 20013162

Assembly members:

Assembly members:
calmodulin, polymer, 148 residues, 16700 Da.
Munc13-1_(458-492), polymer, 36 residues, 4170 Da.
CA, non-polymer, 40.078 Da.

Natural source:

Natural source: Common Name: African clawed frog Taxonomy ID: 8355 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Xenopus laevis

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET28a and pGEX-2T

Entity Sequences (FASTA):

Entity Sequences (FASTA):
calmodulin: ADQLTEEQIAEFKEAFSLFD KDGDGTITTKELGTVMRSLG QNPTEAELQDMINEVDADGN GTIDFPEFLTMMARKMKDTD SEEEIREAFRVFDKDGNGYI SAAELRHVMTNLGEKLTDEE VDEMIREANIDGDGQVNYEE FVQMMTAK
Munc13-1_(458-492): GSRAKANWLRAFNKVRMQLQ EARGEGEMSKSLWFKG

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts

Data type	Count
13C chemical shifts	666
15N chemical shifts	191
1H chemical shifts	1105

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	calmodulin	1
2	Munc13-1	2
3	Calcium I	3
4	Calcium II	3
5	Calcium III	3
6	Calcium IV	3

Entities:

Entity 1, calmodulin 148 residues - 16700 Da.

1

ALA

ASP

GLN

LEU

THR

GLU

GLN

ILE

ALA

2

GLU

PHE

LYS

GLU

ALA

PHE

SER

LEU

PHE

ASP

3

LYS

ASP

GLY

ASP

GLY

THR

ILE

THR

LYS

4

GLU

LEU

GLY

THR

VAL

MET

ARG

SER

LEU

GLY

5

GLN

ASN

PRO

THR

GLU

ALA

GLU

LEU

GLN

ASP

6

MET

ILE

ASN

GLU

VAL

ASP

ALA

ASP

GLY

ASN

7

GLY

THR

ILE

ASP

PHE

PRO

GLU

PHE

LEU

THR

8

MET

ALA

ARG

LYS

MET

LYS

ASP

THR

ASP

9

SER

GLU

ILE

ARG

GLU

ALA

PHE

ARG

10

VAL

PHE

ASP

LYS

ASP

GLY

ASN

GLY

TYR

ILE

11

SER

ALA

GLU

LEU

ARG

HIS

VAL

MET

THR

12

ASN

LEU

GLY

GLU

LYS

LEU

THR

ASP

GLU

13

VAL

ASP

GLU

MET

ILE

ARG

GLU

ALA

ASN

ILE

14

ASP

GLY

ASP

GLY

GLN

VAL

ASN

TYR

GLU

15

PHE

VAL

GLN

MET

THR

ALA

LYS

Entity 2, Munc13-1 36 residues - 4170 Da.

1

GLY

SER

ARG

ALA

LYS

ALA

ASN

TRP

LEU

ARG

2

ALA

PHE

ASN

LYS

VAL

ARG

MET

GLN

LEU

GLN

3

GLU

ALA

ARG

GLY

GLU

GLY

GLU

MET

SER

LYS

4

SER

LEU

TRP

PHE

LYS

GLY

Entity 3, Calcium I - Ca - 40.078 Da.

1

CA

Samples:

13C15NCaM_Munc13-1: calmodulin, [U-13C; U-15N], 1.5 ± 0.2 mM; Munc13-1 1.8 ± 0.2 mM; Calcium chloride 10 ± 1 mM; Bis-Tris 20 ± 2 mM; Potassium chloride 150 ± 15 mM

13C15NMunc13-1_CaM: Munc13-1, [U-13C; U-15N], 0.5 ± 0.1 mM; calmodulin 0.6 ± 0.1 mM; Calcium chloride 10 ± 1 mM; Bis-Tris 20 ± 2 mM; potassium chloride 150 ± 15 mM

13C15NCaM_Munc13-1D2O: calmodulin, [U-13C; U-15N], 1.5 ± 0.2 mM; Munc13-1 1.8 ± 0.2 mM; Calcium chloride 10 ± 1 mM; Bis-Tris 20 ± 2 mM; Potassium chloride 150 ± 15 mM

15NCaM_Munc13-1Pf1: calmodulin, [U-15N], 1.5 ± 0.2 mM; Munc13-1 1.8 ± 0.2 mM; Calcium chloride 10 ± 1 mM; Bis-Tris 20 ± 2 mM; Potassium chloride 150 ± 15 mM; Bacteriophage Pf1 4.2 ± 0.4 mg

13C15NMunc13-1_CaMPf1: Munc13-1, [U-13C; U-15N], 0.5 ± 0.1 mM; calmodulin 0.6 ± 0.1 mM; Calcium chloride 10 ± 1 mM; Bis-Tris 20 ± 2 mM; Potassium chloride 150 ± 15 mM; Bacteriophage Pf1 4.2 ± 0.4 mg

single: ionic strength: 0.16 M; pH: 6.8; pressure: 1 atm; temperature: 308 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	13C15NCaM_Munc13-1	isotropic	single
2D 1H-13C HSQC	13C15NCaM_Munc13-1D2O	isotropic	single
3D CBCA(CO)NH	13C15NCaM_Munc13-1	isotropic	single
3D HNCACB	13C15NCaM_Munc13-1	isotropic	single
3D HNCO	13C15NCaM_Munc13-1	isotropic	single
3D HN(CA)CO	13C15NCaM_Munc13-1	isotropic	single
3D 1H-15N NOESY	13C15NCaM_Munc13-1	isotropic	single
3D 1H-13C NOESY	13C15NCaM_Munc13-1D2O	isotropic	single
3D H(CCO)NH	13C15NCaM_Munc13-1	isotropic	single
3D C(CO)NH	13C15NCaM_Munc13-1	isotropic	single
3D HCCH-TOCSY	13C15NCaM_Munc13-1D2O	isotropic	single
2D HBCBCaro	13C15NCaM_Munc13-1D2O	isotropic	single
3D HMBCMet	13C15NCaM_Munc13-1D2O	isotropic	single
2D 1H-15N HSQC	13C15NMunc13-1_CaM	isotropic	single
2D 1H-13C HSQC	13C15NMunc13-1_CaM	isotropic	single
3D CBCA(CO)NH	13C15NMunc13-1_CaM	isotropic	single
3D C(CO)NH	13C15NMunc13-1_CaM	isotropic	single
3D HNCO	13C15NMunc13-1_CaM	isotropic	single
3D HNCACB	13C15NMunc13-1_CaM	isotropic	single
3D H(CCO)NH	13C15NMunc13-1_CaM	isotropic	single
3D HCCH-TOCSY	13C15NMunc13-1_CaM	isotropic	single
3D 1H-15N NOESY	13C15NMunc13-1_CaM	isotropic	single
3D 1H-13C NOESY	13C15NMunc13-1_CaM	isotropic	single
3D HN(CA)CO	13C15NMunc13-1_CaM	isotropic	single
2D HBCBCaro	13C15NMunc13-1_CaM	isotropic	single
2D 1H-15N HSQC	15NCaM_Munc13-1Pf1	anisotropic	single
2D 1H-15N HSQC	13C15NMunc13-1_CaMPf1	anisotropic	single

Software:

xwinnmr v3.1, Bruker Biospin - collection, processing

FELIX v2004, Accelrys Software Inc. - processing

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

SPARKY v3.110, Goddard - chemical shift assignment, data analysis, peak picking

NMR spectrometers:

Bruker Avance 600 MHz
Bruker DRX 600 MHz
Bruker Avance 700 MHz
Bruker DMX 800 MHz
Bruker Avance 900 MHz

Related Database Links:

BMRB	4056 4270 4284 5480 5770 6541 15184 15185 15186 15187 15188 15191 15624 15650 15852 1634 16418 16465 1648 16764 17264 17360 17771 17807 18027 18028 18556 19036 19238 19586 19604 25253 25257 26503 26626 26627 4056 4270 4284 4310
PDB	1CDL 1CDM 1CFF 1CKK 1IQ5 1MUX 1PRW 1UP5 2BE6 2F3Y 3CLN 1A29 1CFC 1CFD 1CFF 1CKK 1CLL 1CM1 1CM4 1CTR 1DMO 1G4Y 1IQ5 1IWQ 1K90 1K93 1L7Z 1LIN 1LVC 1MUX 1MXE 1NWD 1OOJ 1PRW 1QIV 1QIW 1QX5 1S26 1SK6 1SY9 1UP5 1WRZ 1X02 1XA5 1XFU 1XFV 1XFW 1XFY 1XFZ 1Y0V 1YR5 2BBM 2BBN 2BCX 2BKH 2BKI 2DFS 2F2O 2F2P 2F3Y 2F3Z 2FOT 2HQW 2JZI 2K0E 2K0F 2K0J 2K61 2KDU 2KNE 2L53 2L7L 2LGF 2LL6 2LL7 2LV6 2M0J 2M0K 2M55 2MG5 2MGU 2O5G 2O60 2R28 2V01 2V02 2VAS 2VAY 2W73 2WEL 2X0G 2X51 2Y4V 2YGG 3BXK 3BXL 3BYA 3CLN 3DVE 3DVJ 3DVK 3DVM 3EK4 3EK7 3EK8 3EKH 3EVU 3EVV 3EWT 3EWV 3G43 3GN4 3GOF 3HR4 3IF7 3J41 3L9I 3O77 3O78 3OXQ 3SG2 3SG3 3SG4 3SG5 3SG6 3SG7 3SJQ 3SUI 3U0K 3WFN 4ANJ 4BW7 4BW8 4BYF 4CLN 4DBP 4DBQ 4DCK 4DJC 4E50 4EHQ 4G27 4G28 4HEX 4IK1 4IK3 4IK4 4IK5 4IK8 4IK9 4J9Y 4J9Z 4JPZ 4JQ0 4L79 4LZX 4M1L 4Q5U 4QNH 4R8G 4UMO 4UPU 4V0C 1y8f 2cjt 2csj 2KDU
DBJ	BAA08302 BAA11896 BAA19786 BAA19787 BAA19788 BAA82984 BAE27895 BAJ17676
EMBL	CAA10601 CAA32050 CAA32062 CAA32119 CAA32120 Q62768
GB	AAA35635 AAA35641 AAA37365 AAA40862 AAA40863 AAC52266 AAI72223 AAX09281 EDL28951 ELK19163
PIR	JC1305 MCON
PRF	0409298A 0608335A
REF	NP_001008160 NP_001009759 NP_001039714 NP_001040234 NP_001080864 NP_001025044 NP_001073890 NP_074052 XP_002688619 XP_002801170
SP	O16305 P02594 P21251 P62144 P62145 Q4KUS2 Q62768 Q9UPW8
TPG	DAA13808 DAA18029 DAA19590 DAA24777 DAA24988 DAA28231
AlphaFold	O16305 P02594 P21251 P62144 P62145 Q4KUS2 Q62768 Q9UPW8

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks