BMRB Entry 19238

Name: Backbone 1H, 13C, 15N resonance assignments of calcium-bound calmodulin in complex with PSD95 N-terminal peptide
Published: 2014-12-22

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PDB ID: 2mes
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR19238
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Backbone 1H, 13C, 15N resonance assignments of calcium-bound calmodulin in complex with PSD95 N-terminal peptide

Deposition date:

2013-05-13

Original release date:

2014-12-22

Authors:

Zhang, Yonghong; Ames, James

Citation:

Citation: Zhang, Yonghong; Matt, Lucas; Patriarchi, Tommaso; Malik, Zulfiqar; Chowdhury, Dhrubajyoti; Park, Deborah; Renieri, Alessandra; Ames, James; Hell, Johannes. "Capping of the N-terminus of PSD-95 by calmodulin triggers its postsynaptic release" Embo J. 33, 1341-1353 (2014).
PubMed: 24705785

Assembly members:

Assembly members:
Calmodulin_prototypical_calcium_sensor, polymer, 148 residues, Formula weight is not available
PSD95_N-terminal_peptide, polymer, 71 residues, Formula weight is not available

Natural source:

Natural source: Common Name: African clawed frog Taxonomy ID: 8355 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Xenopus laevis

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET3a

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Calmodulin_prototypical_calcium_sensor: ADQLTEEQIAEFKEAFSLFD KDGDGTITTKELGTVMRSLG QNPTEAELQDMINEVDADGN GTIDFPEFLTMMARKMKDTD SEEEIREAFRVFDKDGNGYI SAAELRHVMTNLGEKLTDEE VDEMIREADIDGDGQVNYEE FVQMMTAK
PSD95_N-terminal_peptide: MDCLCIVTTKKYRYQDEDTP PLEHSPAHLPNQANSPPVIV NTDTLEAPGYELQVNGTEGE MEYEEITLERG

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	440
15N chemical shifts	143
1H chemical shifts	581

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Calmodulin_prototypical_calcium_sensor	1
2	PSD95_N-terminal_peptide	2

Entities:

Entity 1, Calmodulin_prototypical_calcium_sensor 148 residues - Formula weight is not available

1

ALA

ASP

GLN

LEU

THR

GLU

GLN

ILE

ALA

2

GLU

PHE

LYS

GLU

ALA

PHE

SER

LEU

PHE

ASP

3

LYS

ASP

GLY

ASP

GLY

THR

ILE

THR

LYS

4

GLU

LEU

GLY

THR

VAL

MET

ARG

SER

LEU

GLY

5

GLN

ASN

PRO

THR

GLU

ALA

GLU

LEU

GLN

ASP

6

MET

ILE

ASN

GLU

VAL

ASP

ALA

ASP

GLY

ASN

7

GLY

THR

ILE

ASP

PHE

PRO

GLU

PHE

LEU

THR

8

MET

ALA

ARG

LYS

MET

LYS

ASP

THR

ASP

9

SER

GLU

ILE

ARG

GLU

ALA

PHE

ARG

10

VAL

PHE

ASP

LYS

ASP

GLY

ASN

GLY

TYR

ILE

11

SER

ALA

GLU

LEU

ARG

HIS

VAL

MET

THR

12

ASN

LEU

GLY

GLU

LYS

LEU

THR

ASP

GLU

13

VAL

ASP

GLU

MET

ILE

ARG

GLU

ALA

ASP

ILE

14

ASP

GLY

ASP

GLY

GLN

VAL

ASN

TYR

GLU

15

PHE

VAL

GLN

MET

THR

ALA

LYS

Entity 2, PSD95_N-terminal_peptide 71 residues - Formula weight is not available

1

MET

ASP

CYS

LEU

CYS

ILE

VAL

THR

LYS

2

LYS

TYR

ARG

TYR

GLN

ASP

GLU

ASP

THR

PRO

3

PRO

LEU

GLU

HIS

SER

PRO

ALA

HIS

LEU

PRO

4

ASN

GLN

ALA

ASN

SER

PRO

VAL

ILE

VAL

5

ASN

THR

ASP

THR

LEU

GLU

ALA

PRO

GLY

TYR

6

GLU

LEU

GLN

VAL

ASN

GLY

THR

GLU

GLY

GLU

7

MET

GLU

TYR

GLU

ILE

THR

LEU

GLU

ARG

8

GLY

Samples:

sample_1: Calmodulin, PSD95NT, DTT, Tris, CaCl2, [U-99% 13C; U-99% 15N], 400 ± 0.2 uM; PSD95_N-terminal_peptide 600 uM; Tris-d11 20 mM; NaCl 50 mM; CaCl2 5 mM; DTT-d 5 mM; H2O 93%; D2O 7%

sample_conditions_1: ionic strength: 0.1 M; pH: 7.0; pressure: 1 atm; temperature: 310 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HBHA(CO)NH	sample_1	isotropic	sample_conditions_1

Software:

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax, Goddard - peak picking, processing

NMR spectrometers:

Bruker Avance 800 MHz

Related Database Links:

BMRB	15184 15185 15186 15187 15188 15191 15470 15624 15650 15852 1634 16418 16465 1648 16764 17264 17360 17771 17807 18027 18028 18556 19036 19586 19604 25253 25257 26503 26626 26627 4056 4270 4284 4310
PDB	1A29 1CFC 1CFD 1CFF 1CKK 1CLL 1CM1 1CM4 1CTR 1DMO 1G4Y 1IQ5 1IWQ 1K90 1K93 1L7Z 1LIN 1LVC 1MUX 1MXE 1NWD 1OOJ 1PRW 1QIV 1QIW 1QX5 1S26 1SK6 1SY9 1UP5 1WRZ 1X02 1XA5 1XFU 1XFV 1XFW 1XFY 1XFZ 1Y0V 1YR5 2BBM 2BBN 2BCX 2BKH 2BKI 2DFS 2F2O 2F2P 2F3Y 2F3Z 2FOT 2HQW 2JZI 2K0E 2K0F 2K0J 2K61 2KDU 2KNE 2L53 2L7L 2LGF 2LL6 2LL7 2LV6 2M0J 2M0K 2M55 2MG5 2MGU 2O5G 2O60 2R28 2V01 2V02 2VAS 2VAY 2VB6 2W73 2WEL 2X0G 2X51 2Y4V 2YGG 3BXK 3BXL 3BYA 3CLN 3DVE 3DVJ 3DVK 3DVM 3EK4 3EK7 3EK8 3EKH 3EVU 3EVV 3EWT 3EWV 3G43 3GN4 3GOF 3HR4 3IF7 3J41 3L9I 3O77 3O78 3OXQ 3SG2 3SG3 3SG4 3SG5 3SG6 3SG7 3SJQ 3SUI 3U0K 3WFN 4ANJ 4BW7 4BW8 4BYF 4CLN 4DBP 4DBQ 4DCK 4DJC 4E50 4EHQ 4G27 4G28 4HEX 4IK1 4IK3 4IK4 4IK5 4IK8 4IK9 4J9Y 4J9Z 4JPZ 4JQ0 4L79 4LZX 4M1L 4PJJ 4Q5U 4QNH 4R8G 4UMO 4UPU 4V0C
DBJ	BAA08302 BAA11896 BAA19786 BAA19787 BAA19788 BAA09297 BAG10877 BAH11607
EMBL	CAA10601 CAA32050 CAA32062 CAA32119 CAA32120 CAA47103
GB	AAA35635 AAA35641 AAA37365 AAA40862 AAA40863 AAA41971 AAQ56705
PIR	JC1305 MCON
PRF	0409298A 0608335A
REF	NP_001008160 NP_001009759 NP_001027633 NP_001039714 NP_001040234 NP_031890 NP_062567 XP_004594887 XP_004638436 XP_004669318
SP	O02367 O16305 O96081 P02594 P05932 P31016 P78352 Q62108
TPG	DAA13808 DAA18029 DAA19590 DAA24777 DAA24988
AlphaFold	O02367 O16305 O96081 P02594 P05932 P31016 P78352 Q62108

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks