BMRB Entry 6026

Name: Chemical Shift Assignments for Oxidized Human Ferredoxin
Published: 2004-07-30

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6026

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Chemical Shift Assignments for Oxidized Human Ferredoxin

Deposition date:

2003-12-01

Original release date:

2004-07-30

Authors:

Machonkin, Timothy; Westler, William; Markley, John

Citation:

Citation: Machonkin, Timothy; Westler, William; Markley, John. "Strategy for the Study of Paramagnetic Proteins with Slow Electronic Relaxation Rates by NMR Spectroscopy: Application to Oxidized Human [2Fe-2S] Ferredoxin" J. Am. Chem. Soc. 126, 5413-5426 (2004).
PubMed: 15113213

Assembly members:

Assembly members:
Oxidized Human Ferredoxin, polymer, 124 residues, Formula weight is not available
FES, non-polymer, 175.820 Da.

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Oxidized Human Ferredoxin: SSSEDKITVHFINRDGETLT TKGKVGDSLLDVVVENNLDI DGFGACEGTLACSTCHLIFE DHIYEKLDAITDEENDMLDL AYGLTDRSRLGCQICLTKSM DNMTVRVPETVADARQSIDV GKTS

Data sets:

assigned_chemical_shifts
- shift_set_1

Data type	Count
1H chemical shifts	585
13C chemical shifts	401
15N chemical shifts	16

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Ferredoxin	1
2	[2Fe-2S] cluster	2

Entities:

Entity 1, Ferredoxin 124 residues - Formula weight is not available

1

SER

GLU

ASP

LYS

ILE

THR

VAL

HIS

2

PHE

ILE

ASN

ARG

ASP

GLY

GLU

THR

LEU

THR

3

THR

LYS

GLY

LYS

VAL

GLY

ASP

SER

LEU

4

ASP

VAL

GLU

ASN

LEU

ASP

ILE

5

ASP

GLY

PHE

GLY

ALA

CYS

GLU

GLY

THR

LEU

6

ALA

CYS

SER

THR

CYS

HIS

LEU

ILE

PHE

GLU

7

ASP

HIS

ILE

TYR

GLU

LYS

LEU

ASP

ALA

ILE

8

THR

ASP

GLU

ASN

ASP

MET

LEU

ASP

LEU

9

ALA

TYR

GLY

LEU

THR

ASP

ARG

SER

ARG

LEU

10

GLY

CYS

GLN

ILE

CYS

LEU

THR

LYS

SER

MET

11

ASP

ASN

MET

THR

VAL

ARG

VAL

PRO

GLU

THR

12

VAL

ALA

ASP

ALA

ARG

GLN

SER

ILE

ASP

VAL

13

GLY

LYS

THR

SER

Entity 2, [2Fe-2S] cluster - Fe2 S2 - 175.820 Da.

1

FES

REF	XP_508877 NP_004100 XP_001105034
SWISS-PROT	P10109
GenBank	AAA50462 AAA76853 AAA35855 AAA35856 AAA35829
BMRB	5337 4439 4440 4073 4074

BMRB Entry 6026

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links:

Name	Sample	Sample state	Sample conditions
1D 1H-SuperWEFT	not available	not available	Ex-cond_1
1D 13C-SuperWEFT	not available	not available	Ex-cond_1
1D 15N 1-pulse	not available	not available	Ex-cond_1
1D 15N-SuperWEFT	not available	not available	Ex-cond_1
1D 1H{13C} Difference Decoupling	not available	not available	Ex-cond_1
1D 13C{15N} Difference Decoupling	not available	not available	Ex-cond_1
2D 1H{13C} HSQC	not available	not available	Ex-cond_1
3D 1H{13C} HC(C)H-COSY	not available	not available	Ex-cond_1
2D 13C{13C} CT-COSY	not available	not available	Ex-cond_1
2D 1H{13C} PRE-HSQC	not available	not available	Ex-cond_1
3D 1H{13C} (H)CCH-COSY	not available	not available	Ex-cond_1