BMRB Entry 5197

Name: 1H and 13CA chemical shift assignments of the polypeptide mPrP(143-158)
Published: 2001-11-12

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR5197

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

1H and 13CA chemical shift assignments of the polypeptide mPrP(143-158)

Deposition date:

2001-10-29

Original release date:

2001-11-12

Authors:

Liu, Aizhuo; Riek, Roland; Zahn, Ralph; Glockshuber, Rudolf; Wuthrich, Kurt

Citation:

Citation: Liu, Aizhuo; Riek, Roland; Zahn, Ralph; Glockshuber, Rudolf; Wuthrich, Kurt. "Helix protensity of a polypeptide containing helix 1 of the mouse prion protein studied by NMR and CD spectroscopy " Biopolymers 51, 145-152 (1999).
PubMed: 10397798

Assembly members:

Assembly members:
mPrP(143-158), polymer, 16 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus

Experimental source:

Experimental source: Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
mPrP(143-158): NDWEDRYYRENMYRYP

Data sets:

assigned_chemical_shifts

Data type	Count
1H chemical shifts	604
13C chemical shifts	64

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	mouse prion protein, trans conformer	1
2	mouse prion protein, cis conformer	1

Entities:

Entity 1, mouse prion protein, trans conformer 16 residues - Formula weight is not available

1

ASN

ASP

TRP

GLU

ASP

ARG

TYR

ARG

GLU

2

ASN

MET

TYR

ARG

TYR

PRO

Samples:

sample_1: mPrP(143-158) 1.0 mM; H2O 90%; D2O 10%

sample_2: mPrP(143-158) 1.0 mM; H2O 90%; TFE, [U-2H], 10%

sample_3: mPrP(143-158) 1.0 mM; H2O 75%; TFE, [U-2H], 25%

sample_4: mPrP(143-158) 1.0 mM; H2O 50%; TFE, [U-2H], 50%

Ex-cond_1: pH: 4.5; temperature: 293 K

Experiments:

Name	Sample	Sample state	Sample conditions
not available	not available	not available	Ex-cond_1

Software:

No software information available

NMR spectrometers:

Varian INOVA 400 MHz
Bruker DRX 500 MHz

BMRB	15845 16071 16075 16076 16077 16078 16079 16080 16184 16185 16722 16723 17081 17082 17084 17087 17174 17213 17758 17759
PDB	1AG2 1XYX 1Y15 1Y16 2K5O 2KFM 2KFO 2KU5 2KU6 2L1D 2L1E 2L1H 2L1K 2L39 2L40 4H88 4MA7 4MA8
DBJ	BAA08790 BAE28320 BAE28693 BAE29994 BAE34221
EMBL	CAJ18553
GB	AAA39996 AAA39997 AAA39998 AAA39999 AAA41947
PRF	1106228A
REF	NP_001265185 NP_035300 NP_036763 XP_006235124
SP	P04925 P13852 Q9Z0T3
AlphaFold	P04925 P13852 Q9Z0T3