BMRB Entry 6048
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR6048
NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry
Citation: Sforca, Mauricio; Machado, Alessandra; Figueredo, Rita; Oyama, Sergio; Silva, F.; Miranda, Antonio; Daffre, Sirlei; Miranda, Maria; Spisni, Alberto; Pertinhez, Thelma. "The Micelle-Bound Structure of an Antimicrobial Peptide Derived from the alpha-Chain of Bovine
Hemoglobin Isolated from the Tick Boophilus microplus." Biochemistry 44, 6440-6451 (2005).
PubMed: 15850378
Assembly members:
Hemoglobin fragment, polymer, 30 residues, 3205 Da.
Natural source: Common Name: southern cattle tick Taxonomy ID: 6941 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Boophilus microplus
Experimental source: Production method: chemical synthesis
Entity Sequences (FASTA):
Hemoglobin fragment: FLSFPTTKTYFPHFDLSHGS
AQVKGHGAKX
- assigned_chemical_shifts
- coupling_constants
| Data type | Count |
| 1H chemical shifts | 178 |
| coupling constants | 23 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | Hb3361a monomer | 1 |
Entities:
Entity 1, Hb3361a monomer 30 residues - 3205 Da.
| 1 | PHE | LEU | SER | PHE | PRO | THR | THR | LYS | THR | TYR | |
| 2 | PHE | PRO | HIS | PHE | ASP | LEU | SER | HIS | GLY | SER | |
| 3 | ALA | GLN | VAL | LYS | GLY | HIS | GLY | ALA | LYS | NH2 |
Samples:
sample_1: Hemoglobin fragment 1 mM; SDS 200 mM
Hb3361a_condition: pH: 4.0; temperature: 310 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D Noesy | sample_1 | not available | Hb3361a_condition |
| 2D Tocsy | sample_1 | not available | Hb3361a_condition |
| 2D DQFCOSY | sample_1 | not available | Hb3361a_condition |
Software:
FELIX - semi-automated peak assignments
NMRPIPE-NMRVIEW - semi-automated peak assignments
DYANA - simulated annealing
DISCOVER - energy minimization
INSIGHTII - structure vizualization
PROCHECK-NMR - statistical analysis
CNS - statistical analysis
NMR spectrometers:
- Varian INOVA 600 MHz
- Varian INOVA 500 MHz
Related Database Links:
| BMRB | 1101 16891 16898 25 2707 2709 2868 3442 5809 6360 6413 6414 907 |
| PDB | |
| DBJ | BAD97112 BAJ20323 |
| EMBL | CAA23748 CAA23749 CAA23750 CAA23752 CAA23774 |
| GB | AAA30909 AAA30910 AAA36844 AAA52631 AAB22948 |
| PIR | A24693 HAMQR |
| PRF | 0907233A 1004268B 1004272A 1004272B 1509322A |
| REF | NP_000508 NP_000549 NP_001036091 NP_001036092 NP_001038189 |
| SP | P01923 P01924 P01926 P01928 P01929 |
| TPG | DAA15749 |
| AlphaFold | P01923 P01924 P01926 P01928 P01929 |