BMRB Entry 6414

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR6414

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

FRAGMENT 33-61 OF BOVINE alpha-HEMOGLBIN: THE EFFECT OF C-TERMINAL AMIDATION AND IDENTIFICATION OF THE MINIMAL PORTION WITH ANTIFUNGAL ACTIVITY

Deposition date:

2004-12-06

Original release date:

2008-07-17

Authors:

Machado, Alessandra; Sforca, Mauricio; Miranda, Antonio; Daffre, Sirlei; Spisni, Alberto; Pertinhez, Thelma; Miranda, M. Teresa

Citation:

Citation: Sforca, Mauricio; Machado, Alessandra; Figueredo, Rita; Oyama, Sergio; Silva, Fernanda; Miranda, Antonio; Daffre, Sirlei; Miranda, M.; Spisni, Alberto; Pertinhez, Thelma. "The micelle-bound structure of an antimicrobial peptide derived from the alpha-chain of bovine hemoglobin isolated from the tick Boophilus microplus." Biochemistry 44, 6440-6451 (2005).
PubMed: 15850378

Assembly members:

Assembly members:
amidated fragment 33-52, polymer, 21 residues, 2327.6 Da.

Natural source:

Natural source: Common Name: Cow Taxonomy ID: 9913 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Bos taurus

Experimental source:

Experimental source: Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
amidated fragment 33-52: FLSFPTTKTYFPHFDLSHGS X

Data sets:

assigned_chemical_shifts
- shift_set_1

Data type	Count
1H chemical shifts	101

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	amidated fragment 33-52	1

Entities:

Entity 1, amidated fragment 33-52 21 residues - 2327.6 Da.

1

PHE

LEU

SER

PHE

PRO

THR

LYS

THR

TYR

2

PHE

PRO

HIS

PHE

ASP

LEU

SER

HIS

GLY

SER

3

NH2

Samples:

sample_1: amidated fragment 33-52 1.0 mM; sodium dodecyl sulfate (SDS) 200 mM

Ex-cond_1: pH: 4.0; temperature: 310 K

Experiments:

Name	Sample	Sample state	Sample conditions
1H DQF-COSY	sample_1	not available	Ex-cond_1
NOESY	sample_1	not available	Ex-cond_1
ROESY	sample_1	not available	Ex-cond_1
TOCSY	sample_1	not available	Ex-cond_1

Software:

NMRrpipe_NMRview v5.0 -

NMR spectrometers:

Varian Inova 500 MHz

Related Database Links:

BMRB	1101 16891 16898 25 2707 2709 2868 3442 5809 6048 907
PDB	1A00 1A01 1A0U 1A0Z 1A3N 1A9W 1ABW 1ABY 1AJ9 1B86 1BAB 1BBB 1BIJ 1BUW 1BZ0 1BZ1 1BZZ 1C7B 1C7C 1C7D 1CLS 1CMY 1COH 1DKE 1DXT 1DXU 1DXV 1FDH 1FN3 1FSX 1G08 1G09 1G0A 1G9V 1GBU 1GBV 1GZX 1HAB 1HAC 1HBA 1HBB 1HBS 1HCO 1HDA 1HDB 1HDS 1HGA 1HGB 1HGC 1HHO 1IRD 1J3Y 1J3Z 1J40 1J41 1J7S 1J7W 1J7Y 1JY7 1K0Y 1K1K 1KD2 1LFL 1LFQ 1LFT 1LFV 1LFY 1LFZ 1LJW 1M9P 1MKO 1NEJ 1NIH 1NQP 1O1I 1O1J 1O1K 1O1L 1O1M 1O1N 1O1O 1O1P 1QI8 1QSH 1QSI 1QXD 1QXE 1R1X 1R1Y 1RPS 1RQ3 1RQ4 1RQA 1RVW 1SDK 1SDL 1SHR 1SI4 1THB 1UIW 1VWT 1XXT 1XZ2 1XZ5 1XZ7 1XZU 1XZV 1Y01 1Y09 1Y0A 1Y0C 1Y0D 1Y0T 1Y0W 1Y22 1Y2Z 1Y31 1Y35 1Y45 1Y46 1Y4B 1Y4F 1Y4G 1Y4P 1Y4Q 1Y4R 1Y4V 1Y5F 1Y5J 1Y5K 1Y7C 1Y7D 1Y7G 1Y7Z 1Y83 1Y85 1Y8W 1YDZ 1YE0 1YE1 1YE2 1YEN 1YEO 1YEQ 1YEU 1YEV 1YFF 1YG5 1YGD 1YGF 1YH9 1YHE 1YHR 1YIE 1YIH 1YVQ 1YVT 1YZI 1Z8U 2D5Z 2D60 2DN1 2DN2 2DN3 2DXM 2H35 2HBC 2HBD 2HBE 2HBF 2HBS 2HCO 2HHB 2HHD 2HHE 2M6Z 2QSP 2QSS 2QU0 2RI4 2W6V 2W72 2YRS 3B75 3CIU 3CY5 3D17 3D1A 3D7O 3DUT 3EU1 3HHB 3HXN 3IA3 3IC0 3IC2 3KMF 3NL7 3NMM 3ODQ 3ONZ 3OO4 3OO5 3OVU 3P5Q 3PI8 3PI9 3PIA 3QJB 3QJC 3QJD 3QJE 3R5I 3S48 3S65 3S66 3SZK 3WCP 3WHM 4FC3 4HHB 4IJ2 4L7Y 4M4A 4M4B 4MQC 4MQG 4MQH 4MQI 4MQJ 4MQK 4N7N 4N7O 4N7P 4N8T 4NI0 4NI1 4WJG 6HBW
DBJ	BAD97112 BAJ20323
EMBL	CAA23748 CAA23750 CAA23752 CAA23774 CAA25044
GB	AAA30909 AAA30910 AAA35449 AAA36844 AAA52631
PIR	A24693 HAMQR
PRF	0404170A 0409309A 0504211A 0907233A 1004268B
REF	NP_000508 NP_000549 NP_001036091 NP_001036092 NP_001038189
SP	B3EWC7 B3EWC9 P01923 P01924 P01926
TPG	DAA15749
AlphaFold	B3EWC7 B3EWC9 P01923 P01924 P01926