BMRB Entry 6040

Name: SP-B C-terminal peptide in SDS micelles
Published: 2005-01-14

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PDB ID: 1rg3
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR6040
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

SP-B C-terminal peptide in SDS micelles

Deposition date:

2003-12-11

Original release date:

2005-01-14

Authors:

Booth, V.; Waring, A.; Walther, F.; Keough, K.

Citation:

Citation: Booth, V.; Waring, A.; Walther, F.; Keough, K.. "NMR structures of the C-terminal segment of surfactant protein B in detergent micelles and hexafluoro-2-propanol." Biochemistry 43, 15187-15194 (2004).
PubMed: 15568810

Assembly members:

Assembly members:
Pulmonary surfactant-associated protein B, polymer, 16 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Pulmonary surfactant-associated protein B: GRMLPQLVCRLVLRCS

Data sets:

assigned_chemical_shifts
- chemical_shift_set_1

Data type	Count
1H chemical shifts	118
15N chemical shifts	6

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Pulmonary surfactant-associated protein B	1

Entities:

Entity 1, Pulmonary surfactant-associated protein B 16 residues - Formula weight is not available

1

GLY

ARG

MET

LEU

PRO

GLN

LEU

VAL

CYS

ARG

2

LEU

VAL

LEU

ARG

CYS

SER

Samples:

sample_1: Pulmonary surfactant-associated protein B, [15N]-Leu, Val, 2 mM; sodium dodecyl sulfate, [U-2H], 200 mM; DSS 2 mM; H2O 90%; D2O 10%

sample_cond_1: pH: 6.9; temperature: 298 K; ionic strength: 0 M; pressure: 1 atm

Experiments:

Name	Sample	Sample state	Sample conditions
2D TOCSY	not available	not available	not available
2D NOESY	not available	not available	not available
3D 15N-separated NOESY	not available	not available	not available

Software:

NMRPipe v2.2 - processing

NMRView v5.0.4 - data analysis

CNS v1.2 - structure solution, refinement

Ensemble v1 - data analysis

NMR spectrometers:

Bruker AVANCE 500 MHz

BMRB	18809 6741
PDB	1RG3 1RG4 1SSZ 2DWF 2JOU 2M0H
DBJ	BAG37452 BAG64767
GB	AAA36628 AAA60212 AAA88099 AAB59541 AAH32785
REF	NP_000533 NP_942140 XP_003816622 XP_003816624 XP_005264544
SP	P07988
AlphaFold	P07988 P07988