BMRB Entry 5806

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR5806

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the recombinant Penaeidin-3, a shrimp antimicrobial peptide

Deposition date:

2003-05-22

Original release date:

2003-09-28

Authors:

Yang, Yinshan; Poncet, Joel; Garnier, Julien; Zatylny, Celine; Bachere, Evelyne; Aumelas, Andre

Citation:

Citation: Yang, Yinshan; Poncet, Joel; Garnier, Julien; Zatylny, Celine; Bachere, Evelyne; Aumelas, Andre. "Solution Structure of the Recombinant Penaeidin-3, a Shrimp Antimicrobial Peptide" J. Biol. Chem. 278, 36859-36867 (2003).
PubMed: 12842879

Assembly members:

Assembly members:
penaeidin-3, polymer, 63 residues, 6656.3 Da.

Natural source:

Natural source: Common Name: Pacific white shrimp Taxonomy ID: 6689 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Litopenaeus vannamei

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
penaeidin-3: QVYKGGYARPIPRPPPFVRP LPGGPIGPYNGCPVSCRGIS FSQARSCCSRLGRCCHVGKG YSG

Data sets:

assigned_chemical_shifts
- shift_set_1

Data type	Count
1H chemical shifts	410

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	pen-3a monomer	1

Entities:

Entity 1, pen-3a monomer 63 residues - 6656.3 Da.

1

GLN

VAL

TYR

LYS

GLY

TYR

ALA

ARG

PRO

2

ILE

PRO

ARG

PRO

PHE

VAL

ARG

PRO

3

LEU

PRO

GLY

PRO

ILE

GLY

PRO

TYR

ASN

4

GLY

CYS

PRO

VAL

SER

CYS

ARG

GLY

ILE

SER

5

PHE

SER

GLN

ALA

ARG

SER

CYS

SER

ARG

6

LEU

GLY

ARG

CYS

HIS

VAL

GLY

LYS

GLY

7

TYR

SER

GLY

Samples:

sample_1: penaeidin-3 mM

Exp-cond_1: pH: 3.9; temperature: 285 K

Exp-cond_2: pH: 3.9; temperature: 293 K

Exp-cond_3: pH: 3.9; temperature: 300 K

Experiments:

Name	Sample	Sample state	Sample conditions
DQF-COSY	not available	not available	not available
TOCSY	not available	not available	not available
NOESY	not available	not available	not available

Software:

xwinnmr - collection of data, processing

NMR spectrometers:

BRUKER AVANCE 600 MHz
BRUKER AVANCE 500 MHz