BMRB Entry 6556

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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR6556
MolProbity Validation Chart

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Title:
Solution structure of 1-26 fragment of human programmed cell death 5 protein
Deposition date:
2005-03-18
Original release date:
2006-08-11
Authors:
Liu, D.; Feng, Y.; Yao, H.; Wang, J.
Citation:

Citation: Liu, D.; Yao, H.; Chen, Y.; Feng, Y.; Chen, Y.; Wang, J.. "The N-terminal 26-residue fragment of human programmed cell death 5 protein can form a stable alpha-helix having unique electrostatic potential character"  Biochem. J. 392, 47-54 (2005).
PubMed: 16083422

Assembly members:

Assembly members:
Programmed cell death protein 5, polymer, 27 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:

Experimental source:   Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Programmed cell death protein 5: GSADEELEALRRQRLAELQA KHGDPGD

Data sets:
Data typeCount
1H chemical shifts151
13C chemical shifts43
15N chemical shifts24

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1Programmed cell death protein 51

Entities:

Entity 1, Programmed cell death protein 5 27 residues - Formula weight is not available

1   GLYSERALAASPGLUGLULEUGLUALALEU
2   ARGARGGLNARGLEUALAGLULEUGLNALA
3   LYSHISGLYASPPROGLYASP

Samples:

sample_1: Programmed cell death protein 5, [U-15N], 2 – 4 mM; Phosphate buffer 50 mM; NaCl 200 mM; DSS 0.02 mM; NaN3 0.01 mM; H2O 90%; D2O 10%

sample_2: Programmed cell death protein 5, [U-13C], 2 mM; Phosphate buffer 50 mM; NaCl 200 mM; DSS 0.02 mM; NaN3 0.01 mM; D2O 100%

sample_3: Programmed cell death protein 52 – 4 mM; Phosphate buffer 50 mM; NaCl 200 mM; DSS 0.02 mM; NaN3 0.01 mM; H2O 90%; D2O 10%

sample_cond_1: pH: 6.5; temperature: 298 K; ionic strength: 0.25 M; pressure: 1 atm

Experiments:

NameSampleSample stateSample conditions
3D 15N NOESY-HSQCnot availablenot availablenot available
3D 15N TOCSY-HSQCnot availablenot availablenot available
2D 15N HSQCnot availablenot availablenot available
2D 13C HMQCnot availablenot availablenot available
HMQC-NOESYnot availablenot availablenot available
HMQC-TOCSYnot availablenot availablenot available
2D TOCSYnot availablenot availablenot available
2D NOESYnot availablenot availablenot available

Software:

XWINNMR v3.5 - collection

FELIX v98 - data analysis

CNS v1.1 - structure solution, refinement

NMR spectrometers:

  • Bruker DMX 600 MHz

Related Database Links:

BMRB 15864
PDB
DBJ BAG56975 BAJ20402
EMBL CAG33215 CAH90780
GB AAD11579 AAH15519 AAP35340 AAP36696 AAX36432
REF NP_001125439 NP_001252621 NP_004699 XP_003253507 XP_003275098
SP O14737 Q5RBT0
AlphaFold O14737 Q5RBT0

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