BMRB Entry 6158

Name: NMR solution structure of human Saposin C in the presence of detergent micelles
Published: 2005-02-21

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PDB ID: 1sn6
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6158
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

NMR solution structure of human Saposin C in the presence of detergent micelles

Deposition date:

2004-03-22

Original release date:

2005-02-21

Authors:

Hawkins, Cheryl; de Alba, Eva; Tjandra, Nico

Citation:

Citation: Hawkins, Cheryl; de Alba, Eva; Tjandra, Nico. "Solution structure of human saposin C in a detergent environment" J. Mol. Biol. 346, 1381-1392 (2005).
PubMed: 15713488

Assembly members:

Assembly members:
saposin C, polymer, 84 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapien

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
saposin C: SDVYCEVCEFLVKEVTKLID NNKTEKEILDAFDKMCSKLP KSLSEECQEVVDTYGSSILS ILLEEVSPELVCSMLHLCSG LVPR

Data sets:

assigned_chemical_shifts
- shift_set_1

Data type	Count
13C chemical shifts	377
15N chemical shifts	77
1H chemical shifts	547

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	saposin C	1

Entities:

Entity 1, saposin C 84 residues - Formula weight is not available

1

SER

ASP

VAL

TYR

CYS

GLU

VAL

CYS

GLU

PHE

2

LEU

VAL

LYS

GLU

VAL

THR

LYS

LEU

ILE

ASP

3

ASN

LYS

THR

GLU

LYS

GLU

ILE

LEU

ASP

4

ALA

PHE

ASP

LYS

MET

CYS

SER

LYS

LEU

PRO

5

LYS

SER

LEU

SER

GLU

CYS

GLN

GLU

VAL

6

VAL

ASP

THR

TYR

GLY

SER

ILE

LEU

SER

7

ILE

LEU

GLU

VAL

SER

PRO

GLU

LEU

8

VAL

CYS

SER

MET

LEU

HIS

LEU

CYS

SER

GLY

9

LEU

VAL

PRO

ARG

Samples:

sample_1: saposin C, [U-100% 13C; U-100% 15N], 1.0 mM; sodium dodecyl sulfate 25 mM

condition_1: pH: 6.8; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
CBCACONH	sample_1	not available	condition_1
CBCANH	sample_1	not available	condition_1
HNCO-ge	sample_1	not available	condition_1
dipsi-(CO)NH	sample_1	not available	condition_1
HBHACONH	sample_1	not available	condition_1
H-dipsi-(CO)NH	sample_1	not available	condition_1
15N-edited NOESY	sample_1	not available	condition_1
15N-13C-edited NOESY	sample_1	not available	condition_1
13C-13C-edited NOESY	sample_1	not available	condition_1

Software:

xwinnmr v2.5 - data acquisition

PIPP v4.2.8 - data assignment

NMRPipe v2.1 - data processing

NMR spectrometers:

Bruker Avance 600 MHz
Bruker Avance 800 MHz