BMRB Entry 5198

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR5198

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

1H, 13C, and 15N Chemical Shift Assignments for v107 in complex with vascular endothelial growth factor

Deposition date:

2001-11-02

Original release date:

2002-05-07

Authors:

Pan, Borlan; Li, Bing; Russell, Stephen; Tom, Jeffrey; Cochran, Andrea; Fairbrother, Wayne

Citation:

Citation: Pan, Borlan; Li, Bing; Russell, Stephen; Tom, Jeffrey; Cochran, Andrea; Fairbrother, Wayne. "Solution Structure of a Phage-derived Peptide Antagonist in Complex with Vascular Endothelial Growth Factor " J. Mol. Biol. 316, 769-787 (2002).
PubMed: 11866530

Assembly members:

Assembly members:
v107 peptide, polymer, 19 residues, 2343.0 Da.
vascular endothelial growth factor, polymer, 99 residues, 11625.4 Da.

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
v107 peptide: GGNECDIARMWEWECFERL
vascular endothelial growth factor: HHEVVKFMDVYQRSYCHPIE TLVDIFQEYPDEIEYIFKPS CVPLMRCGGCCNDEGLECVP TEESNITMQIMRIKPHQGQH IGEMSFLQHNKCECRPKKD

Data sets:

assigned_chemical_shifts
- shift_set_1

Data type	Count
1H chemical shifts	122
13C chemical shifts	82
15N chemical shifts	18

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	VEGF subunit 1	2
2	VEGF subunit 2	2
3	v107 subunit 1	1
4	v107 subunit 2	1

Entities:

Entity 2, VEGF subunit 1 99 residues - 11625.4 Da.

1

HIS

GLU

VAL

LYS

PHE

MET

ASP

VAL

2

TYR

GLN

ARG

SER

TYR

CYS

HIS

PRO

ILE

GLU

3

THR

LEU

VAL

ASP

ILE

PHE

GLN

GLU

TYR

PRO

4

ASP

GLU

ILE

GLU

TYR

ILE

PHE

LYS

PRO

SER

5

CYS

VAL

PRO

LEU

MET

ARG

CYS

GLY

CYS

6

CYS

ASN

ASP

GLU

GLY

LEU

GLU

CYS

VAL

PRO

7

THR

GLU

SER

ASN

ILE

THR

MET

GLN

ILE

8

MET

ARG

ILE

LYS

PRO

HIS

GLN

GLY

GLN

HIS

9

ILE

GLY

GLU

MET

SER

PHE

LEU

GLN

HIS

ASN

10

LYS

CYS

GLU

CYS

ARG

PRO

LYS

ASP

Entity 1, v107 subunit 1 19 residues - 2343.0 Da.

1

GLY

ASN

GLU

CYS

ASP

ILE

ALA

ARG

MET

2

TRP

GLU

TRP

GLU

CYS

PHE

GLU

ARG

LEU

Samples:

sample_1: v107 peptide, [U-98% 13C; U-98% 15N], 0.6 mM; vascular endothelial growth factor 0.9 mM

Cond_1: pH: 7.0; temperature: 308 K

Experiments:

Name	Sample	Sample state	Sample conditions

Software:

No software information available

NMR spectrometers:

Bruker DRX 600 MHz
Bruker DRX 800 MHz

Related Database Links:

BMRB	5186 5186 5185
PDB	1BJ1 1CZ8 1FLT 1KAT 1MJV 1MKG 1MKK 1QTY 1TZH 1TZI 1VPF 1VPP 2FJG 2FJH 2QR0 2VPF 3BDY 3P9W 3QTK 3S1B 3S1K 3V2A 4GLN 4GLS 4KZN 2VPF 2QR0 2FJH 2FJG 1VPP 1VPF 1TZI 1TZH 1QTY 1KAT 1FLT 1CZ8 1BJ1
DBJ	BAA78418 BAB68520 BAD92722 BAG70136 BAG70265 BAD92722 BAA78418
EMBL	CAA09179 CAA44447 CAA57143 CAB82426 CAC19923 CAC19515 CAC19513 CAC19512 CAA44447 CAA09179
GB	AAA35789 AAA36804 AAA36807 AAB47118 AAC63102
PRF	2105202A
REF	NP_001003175 NP_001009854 NP_001020537 NP_001020538 NP_001020539 NP_001020541 NP_001020540 NP_001020539 NP_001020538 NP_001020537
SP	P15692 P49151 Q9MYV3
SWISS-PROT	P15692
GenBank	AAC63102 AAB47118 AAA36807 AAA36804 AAA35789
AlphaFold	P15692 P49151 Q9MYV3

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks