BMRB Entry 5186

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR5186

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

1H, 13C, and 15N backbone assignment of the vascular endothelial growth factor receptor-binding domain

Deposition date:

2001-10-19

Original release date:

2002-05-07

Authors:

Pan, Borlan; Fairbrother, Wayne

Citation:

Citation: Pan, Borlan; Fairbrother, Wayne. "1H, 13C, and 15N Resonance Assignment of the Vascular Endothelial Growth Factor Receptor-binding Domain in Complex with a Receptor-blocking Peptide" J. Biomol. NMR 22, 189-190 (2002).
PubMed: 11883783

Assembly members:

Assembly members:
vascular endothelial growth factor, polymer, 99 residues, 11625.4 Da.

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
vascular endothelial growth factor: HHEVVKFMDVYQRSYCHPIE TLVDIFQEYPDEIEYIFKPS CVPLMRCGGCCNDEGLECVP TEESNITMQIMRIKPHQGQH IGEMSFLQHNKCECRPKKD

Data sets:

assigned_chemical_shifts
- shift_set_1

Data type	Count
1H chemical shifts	184
13C chemical shifts	260
15N chemical shifts	85

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	VEGF subunit 1	1
2	VEGF subunit 2	1

Entities:

Entity 1, VEGF subunit 1 99 residues - 11625.4 Da.

1

HIS

GLU

VAL

LYS

PHE

MET

ASP

VAL

2

TYR

GLN

ARG

SER

TYR

CYS

HIS

PRO

ILE

GLU

3

THR

LEU

VAL

ASP

ILE

PHE

GLN

GLU

TYR

PRO

4

ASP

GLU

ILE

GLU

TYR

ILE

PHE

LYS

PRO

SER

5

CYS

VAL

PRO

LEU

MET

ARG

CYS

GLY

CYS

6

CYS

ASN

ASP

GLU

GLY

LEU

GLU

CYS

VAL

PRO

7

THR

GLU

SER

ASN

ILE

THR

MET

GLN

ILE

8

MET

ARG

ILE

LYS

PRO

HIS

GLN

GLY

GLN

HIS

9

ILE

GLY

GLU

MET

SER

PHE

LEU

GLN

HIS

ASN

10

LYS

CYS

GLU

CYS

ARG

PRO

LYS

ASP

Samples:

Sample_1: vascular endothelial growth factor, [U-98% 13C; U-98% 15N], 1.0 mM

Sample_2: vascular endothelial growth factor, [U-98% 13C; U-98% 15N], 2.0 mM

Cond_1: pH: 7.0; temperature: 318 K

Experiments:

Name	Sample	Sample state	Sample conditions

Software:

No software information available

NMR spectrometers:

Bruker AMX 500 MHz
Bruker DRX 800 MHz

BMRB	5198
PDB	1BJ1 1CZ8 1FLT 1KAT 1MJV 1MKG 1MKK 1QTY 1TZH 1TZI 1VPF 1VPP 2FJG 2FJH 2QR0 2VPF 3BDY 3P9W 3QTK 3S1B 3S1K 3V2A 4GLN 4GLS 4KZN
DBJ	BAA78418 BAB68520 BAD92722 BAG70136 BAG70265
EMBL	CAA09179 CAA44447 CAA57143 CAB82426 CAC19923
GB	AAA35789 AAA36804 AAA36807 AAB47118 AAC63102
PRF	2105202A
REF	NP_001003175 NP_001009854 NP_001020537 NP_001020538 NP_001020539
SP	P15692 P49151 Q9MYV3
AlphaFold	P15692 P49151 Q9MYV3