BMRB Entry 25650

Name: Solution structure of RNA recognition motif-1 of Plasmodium falciparum serine/arginine-rich protein 1.
Published: 2016-07-18

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PDB ID: 2n3l
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR25650
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Nicholas Rego and David Koes
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of RNA recognition motif-1 of Plasmodium falciparum serine/arginine-rich protein 1.

Deposition date:

2015-06-05

Original release date:

2016-07-18

Authors:

Ganguly, Akshay Kumar; Verma, Garima; Bhavesh, Neel Sarovar

Citation:

Citation: Ganguly, Akshay Kumar; Verma, Garima; Bhavesh, Neel Sarovar. "The N-terminal RNA Recognition Motif of PfSR1 Confers Semi-specificity for Pyrimidines during RNA Recognition" J. Mol. Biol. ., .-. (2018).
PubMed: 30500338

Assembly members:

Assembly members:
PfSR1-RRM1, polymer, 89 residues, 9997.284 Da.

Natural source:

Natural source: Common Name: malaria parasite P. faciparum Taxonomy ID: 5833 Superkingdom: Eukaryota Kingdom: Chromalveolata Genus/species: Plasmodium falciparum

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET28a

Entity Sequences (FASTA):

Entity Sequences (FASTA):
PfSR1-RRM1: GSHMVIRESVSRIYVGNLPS HVSSRDVENEFRKYGNILKC DVKKTVSGAAFAFIEFEDAR DAADAIKEKDGCDFEGNKLR VEVPFNARE

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	356
15N chemical shifts	84
1H chemical shifts	491

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	RNA recognition motif-1 of serine/arginine-rich protein 1	1

Entities:

Entity 1, RNA recognition motif-1 of serine/arginine-rich protein 1 89 residues - 9997.284 Da.

Residues G, S and H at the amino terminus are derived from the vector pET28a and have been numbered as -2, -1 and 0, respectively.

1

GLY

SER

HIS

MET

VAL

ILE

ARG

GLU

SER

VAL

2

SER

ARG

ILE

TYR

VAL

GLY

ASN

LEU

PRO

SER

3

HIS

VAL

SER

ARG

ASP

VAL

GLU

ASN

GLU

4

PHE

ARG

LYS

TYR

GLY

ASN

ILE

LEU

LYS

CYS

5

ASP

VAL

LYS

THR

VAL

SER

GLY

ALA

6

PHE

ALA

PHE

ILE

GLU

PHE

GLU

ASP

ALA

ARG

7

ASP

ALA

ASP

ALA

ILE

LYS

GLU

LYS

ASP

8

GLY

CYS

ASP

PHE

GLU

GLY

ASN

LYS

LEU

ARG

9

VAL

GLU

VAL

PRO

PHE

ASN

ALA

ARG

GLU

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC aliphatic	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC aromatic	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D C(CO)NH	sample_1	isotropic	sample_conditions_1
3D H(CCO)NH	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY aromatic	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY aliphatic	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY aliphatic	sample_d2o	isotropic	sample_conditions_1

BMRB Entry 25650

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

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