BMRB Entry 19771

Name: Solution structure of CPEB1 ZZ domain in the free state
Published: 2014-07-21

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PDB ID: 2mke
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR19771
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of CPEB1 ZZ domain in the free state

Deposition date:

2014-02-06

Original release date:

2014-07-21

Authors:

Afroz, Tariq; Skrisovska, Lenka; Belloc, Eulalia; Boixet, Jordina; Mendez, Raul; Allain, Frederic

Citation:

Citation: Afroz, Tariq; Skrisovska, Lenka; Belloc, Eulalia; Boixet, Jordina; Mendez, Raul; Allain, Frederic. "A fly trap mechanism provides sequence-specific RNA recognition by CPEB proteins" Genes Dev. 28, 1498-1514 (2014).
PubMed: 24990967

Assembly members:

Assembly members:
CPEB1ZZ, polymer, 61 residues, 7387.450 Da.
ZINC ION, non-polymer, 65.409 Da.

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET28A(+)

Entity Sequences (FASTA):

Entity Sequences (FASTA):
CPEB1ZZ: IDPYLEDSLCHICSSQPGPF FCRDQVCFKYFCRSCWHWRH SMEGLRHHSPLMRNQKNRDS S

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	173
15N chemical shifts	59
1H chemical shifts	334

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	CPEB1ZZ	1
2	ZINC ION_1	2
3	ZINC ION_2	2

Entities:

Entity 1, CPEB1ZZ 61 residues - 7387.450 Da.

1

ILE

ASP

PRO

TYR

LEU

GLU

ASP

SER

LEU

CYS

2

HIS

ILE

CYS

SER

GLN

PRO

GLY

PRO

PHE

3

PHE

CYS

ARG

ASP

GLN

VAL

CYS

PHE

LYS

TYR

4

PHE

CYS

ARG

SER

CYS

TRP

HIS

TRP

ARG

HIS

5

SER

MET

GLU

GLY

LEU

ARG

HIS

SER

PRO

6

LEU

MET

ARG

ASN

GLN

LYS

ASN

ARG

ASP

SER

7

SER

Entity 2, ZINC ION_1 - Zn - 65.409 Da.

1

ZN

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_2	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC aliphatic	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC aromatic	sample_1	isotropic	sample_conditions_1
2D 1H-1H TOCSY	sample_2	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HNCA	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_2	isotropic	sample_conditions_1
3D 1H-13C NOESY aliphatic	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY aromatic	sample_1	isotropic	sample_conditions_1
2D 1H-1H NOESY	sample_2	isotropic	sample_conditions_1

BMRB	18840
PDB	2M13 2MKE
DBJ	BAB14496 BAB33089 BAC37017 BAG63194 BAH11723
EMBL	CAA69588 CAH92427
GB	AAH35348 AAH50629 AAI25477 AAK01239 AAK01240
REF	NP_001073001 NP_001073002 NP_001073003 NP_001099746 NP_001126432
SP	P0C279 P70166 Q5R733 Q9BZB8
TPG	DAA17635
AlphaFold	P0C279 P70166 Q5R733 Q9BZB8

BMRB Entry 19771

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

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