BMRB Entry 19329

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PDB ID: 2ma6
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR19329
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Nicholas Rego and David Koes
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution NMR Structure of the RING finger domain from the Kip1 ubiquitination-promoting E3 complex protein 1 (KPC1/RNF123) from Homo sapiens, Northeast Structural Genomics Consortium (NESG) Target HR8700A

Deposition date:

2013-06-28

Original release date:

2013-07-19

Authors:

Ramelot, Theresa; Yang, Yunhuang; Janjua, Haleema; Kohan, Eitan; Wang, Huang; Xiao, Rong; Acton, Thomas; Everett, John; Montelione, Gaetano; Kennedy, Michael

Citation:

Citation: Ramelot, Theresa; Yang, Yunhuang; Janjua, Haleema; Kohan, Eitan; Wang, Huang; Xiao, Rong; Acton, Thomas; Everett, John; Montelione, Gaetano; Kennedy, Michael. "Solution NMR Structure of the RING finger domain from the Kip1 ubiquitination-promoting E3 complex protein 1 (KPC1/RNF123) from Homo sapiens, Northeast Structural Genomics Consortium (NESG) Target HR8700A" To be published ., .-..

Assembly members:

Assembly members:
HR8700A, polymer, 61 residues, 6977.676 Da.
entity_ZN, non-polymer, 65.409 Da.

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET15Avi6HT_NESG

Entity Sequences (FASTA):

Entity Sequences (FASTA):
HR8700A: SHMPTSEEDLCPICYAHPIS AVFQPCGHKSCKACINQHLM NNKDCFFCKTTIVSVEDWEK G

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1
spectral_peak_list
- Nnoesy_NUS
- NUS_Cnoesy_both

Data type	Count
13C chemical shifts	268
15N chemical shifts	68
1H chemical shifts	409

Time Domain Data

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	HR8700A	1
2	ZN ion, 1	2
3	ZN ion, 2	2

Entities:

Entity 1, HR8700A 61 residues - 6977.676 Da.

First three residues, SHM, are non-native. Residues 1254-1292 of RNF123

1

SER

HIS

MET

PRO

THR

SER

GLU

ASP

LEU

2

CYS

PRO

ILE

CYS

TYR

ALA

HIS

PRO

ILE

SER

3

ALA

VAL

PHE

GLN

PRO

CYS

GLY

HIS

LYS

SER

4

CYS

LYS

ALA

CYS

ILE

ASN

GLN

HIS

LEU

MET

5

ASN

LYS

ASP

CYS

PHE

CYS

LYS

THR

6

THR

ILE

VAL

SER

VAL

GLU

ASP

TRP

GLU

LYS

7

GLY

Entity 2, ZN ion, 1 - Zn - 65.409 Da.

1

ZN

Samples:

sample_NC_HR8700A.005: HR8700A.005, [U-15N] 5% 13C-fractional labeling, 1.0 mM; NaN3 0.02%; DTT 10 mM; CaCL2 5 mM; NaCL 100 mM; Proteinase Inhibitors 1 x; MES pH 6.5 20 mM; D2O 10%; DSS 50 uM

sample_D2O_NC_HR8700A.005: HR8700A.005, [U-100% 13C; U-100% 15N], 1.0 mM; NaN3 0.02%; DTT 10 mM; CaCL2 5 mM; NaCL 100 mM; Proteinase Inhibitors 1 x; MES pH 6.5 20 mM; D2O 100%; DSS 50 uM

sample_NC5_HR8700A.007: HR8700A.007, [U-100% 15N] 5% 13C-fractional labeling, 0.9 mM; NaN3 0.02%; DTT 10 mM; CaCL2 5 mM; NaCL 100 mM; Proteinase Inhibitors 1 x; MES pH 6.5 20 mM; D2O 10%; DSS 50 uM

sample_conditions_1: pH: 6.5; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_NC_HR8700A.005	isotropic	sample_conditions_1
2D 1H-13C HSQC aliphatic	sample_NC_HR8700A.005	isotropic	sample_conditions_1
2D 1H-13C HSQC aromatic CT	sample_NC_HR8700A.005	isotropic	sample_conditions_1
2D 1H-13C HSQC aromatic noCT	sample_NC_HR8700A.005	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_NC_HR8700A.005	isotropic	sample_conditions_1
3D 1H-15N NOESY NUS	sample_NC_HR8700A.005	isotropic	sample_conditions_1
3D 1H-13C NOESY aliphatic	sample_NC_HR8700A.005	isotropic	sample_conditions_1
3D 1H-13C NOESY aliphatic NUS	sample_NC_HR8700A.005	isotropic	sample_conditions_1
3D 1H-13C NOESY aromatic	sample_NC_HR8700A.005	isotropic	sample_conditions_1
2D 1H-13C HSQC aliphatic	sample_D2O_NC_HR8700A.005	isotropic	sample_conditions_1
3D C(CO)NH	sample_NC_HR8700A.005	isotropic	sample_conditions_1
3D H(CCO)NH	sample_NC_HR8700A.005	isotropic	sample_conditions_1
3D HCCH-COSY	sample_NC_HR8700A.005	isotropic	sample_conditions_1
2D 1H-15N HSQC	sample_NC5_HR8700A.007	isotropic	sample_conditions_1
2D 1H-13C HSQC aliphatic	sample_NC5_HR8700A.007	isotropic	sample_conditions_1
2D 1H-15N HSQC HIS	sample_NC5_HR8700A.007	isotropic	sample_conditions_1
1D T1 NSQC array	sample_NC_HR8700A.005	isotropic	sample_conditions_1
1D T2 NHSQC array	sample_NC_HR8700A.005	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_NC_HR8700A.005	isotropic	sample_conditions_1
3D HNCACB	sample_NC_HR8700A.005	isotropic	sample_conditions_1
3D HBHA(CO)NH	sample_NC_HR8700A.005	isotropic	sample_conditions_1
3D HNCO	sample_NC_HR8700A.005	isotropic	sample_conditions_1
2D 1H-15N HSQC NH2 only	sample_NC_HR8700A.005	isotropic	sample_conditions_1
4D HCCH NOESY	sample_D2O_NC_HR8700A.005	isotropic	sample_conditions_1
3D CCH-TOCSY	sample_D2O_NC_HR8700A.005	isotropic	sample_conditions_1
2D 1H-15N HSQC	sample_D2O_NC_HR8700A.005	isotropic	sample_conditions_1
2D 1H-15N HSQC	sample_NC_HR8700A.005	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_NC_HR8700A.005	isotropic	sample_conditions_1

UNP	Q5XPI4
PDB	2MA6
AlphaFold	Q9H9T2

BMRB Entry 19329

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Assembly:

Entities:

Samples:

Experiments:

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NMR spectrometers:

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