BMRB Entry 16911

Name: Chemical Shift Assignments from PfEMP1: Structured Core
Published: 2012-01-18

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PDB ID: 2lkl
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR16911
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Chemical Shift Assignments from PfEMP1: Structured Core

Deposition date:

2010-04-30

Original release date:

2012-01-18

Authors:

Vakonakis, Ioannis; Erat, Michele

Citation:

Citation: Mayer, Christina; Slater, Leanne; Erat, Michele; Konrat, Robert; Vakonakis, Ioannis. "Structural Analysis of the Plasmodium falciparum Erythrocyte Membrane Protein 1 (PfEMP1) Intracellular Domain Reveals a Conserved Interaction Epitope." J. Biol. Chem. 287, 7182-7189 (2012).
PubMed: 22249178

Assembly members:

Assembly members:
VARC244, polymer, 81 residues, 9707.9 Da.

Natural source:

Natural source: Common Name: Plasmodium falciparum Taxonomy ID: 5833 Superkingdom: Eukaryota Kingdom: not available Genus/species: Plasmodium falciparum

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET16b

Entity Sequences (FASTA):

Entity Sequences (FASTA):
VARC244: GPLGSMNKFTDDEWNQLKQD FISGILENEQKDLVAKLTNS DPIMNQLDLLHKWLDRHRDM CEKWKSKEDILHKLNEQWNK D

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	364
15N chemical shifts	95
1H chemical shifts	604

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	VARC244	1

Entities:

Entity 1, VARC244 81 residues - 9707.9 Da.

Sequence corresponds to joining of two distinct regions of the accession

1

GLY

PRO

LEU

GLY

SER

MET

ASN

LYS

PHE

THR

2

ASP

GLU

TRP

ASN

GLN

LEU

LYS

GLN

ASP

3

PHE

ILE

SER

GLY

ILE

LEU

GLU

ASN

GLU

GLN

4

LYS

ASP

LEU

VAL

ALA

LYS

LEU

THR

ASN

SER

5

ASP

PRO

ILE

MET

ASN

GLN

LEU

ASP

LEU

6

HIS

LYS

TRP

LEU

ASP

ARG

HIS

ARG

ASP

MET

7

CYS

GLU

LYS

TRP

LYS

SER

LYS

GLU

ASP

ILE

8

LEU

HIS

LYS

LEU

ASN

GLU

GLN

TRP

ASN

LYS

9

ASP

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_3	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_2	isotropic	sample_conditions_1
3D C(CO)NH	sample_2	isotropic	sample_conditions_1
3D HNCO	sample_2	isotropic	sample_conditions_1
3D HNCACB	sample_2	isotropic	sample_conditions_1
3D H(CCO)NH	sample_2	isotropic	sample_conditions_1
3D HCCH-COSY	sample_3	isotropic	sample_conditions_1
3D HNHB	sample_1	isotropic	sample_conditions_1
3D HNHA	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY	sample_3	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
3D HBHA(CO)NH	sample_2	isotropic	sample_conditions_1
4D 13C-13C NOESY	sample_3	isotropic	sample_conditions_1

BMRB Entry 16911

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

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