BMRB Entry 15622

Click here to enlarge.

PDB ID: 2job
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full
BMRB Entry DOI: doi:10.13018/BMR15622
MolProbity Validation Chart

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Title:
Solution structure of an antilipopolysaccharide factor from shrimp
Deposition date:
2008-01-09
Original release date:
2008-09-19
Authors:
Yang, Yinshan; Boze, Helene; Chemardin, Patrick; Padilla, Andre; Moulin, Guy; Tassanakajon, Anchalaee; Pugniere, Martine; Roquet, Francoise; Gueguen, Yannick; Bachere, Evelyne; Aumelas, Andre
Citation:

Citation: Somboonwiwat, Kunlaya; Bachere, Evelyne; Rimphanitchayakit, Vichien; Tassanakajon, Anchalaee. "Localization of anti-lipopolysaccharide factor (ALFPm3) in tissues of the black tiger shrimp, Penaeus monodon, and characterization of its binding properties."  Dev. Comp. Immunol. 32, 1170-1176 (2008).
PubMed: 18466970

Assembly members:

Assembly members:
antilipopolysaccharide_factor, polymer, 102 residues, 11534.318 Da.

Natural source:

Natural source:   Common Name: black tiger shrimp   Taxonomy ID: 6687   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Penaeus monodon

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Pichia pastoris   Vector: not available

Entity Sequences (FASTA):

Entity Sequences (FASTA):
antilipopolysaccharide_factor: EAYVQGWEAVAAAVASKIVG LWRNEKTELLGHECKFTVKP YLKRFQVYYKGRMWCPGWTA IRGEASTRSQSGVAGKTAKD FVRKAFQKGLISQQEANQWL SS

Data sets:
Data typeCount
15N chemical shifts90
1H chemical shifts619

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1antilipopolysaccharide factor1

Entities:

Entity 1, antilipopolysaccharide factor 102 residues - 11534.318 Da.

1   GLUALATYRVALGLNGLYTRPGLUALAVAL
2   ALAALAALAVALALASERLYSILEVALGLY
3   LEUTRPARGASNGLULYSTHRGLULEULEU
4   GLYHISGLUCYSLYSPHETHRVALLYSPRO
5   TYRLEULYSARGPHEGLNVALTYRTYRLYS
6   GLYARGMETTRPCYSPROGLYTRPTHRALA
7   ILEARGGLYGLUALASERTHRARGSERGLN
8   SERGLYVALALAGLYLYSTHRALALYSASP
9   PHEVALARGLYSALAPHEGLNLYSGLYLEU
10   ILESERGLNGLNGLUALAASNGLNTRPLEU
11   SERSER

Related Database Links:

PDB 2JOB
GB ABP73289 ABP73292 ACC86067 ADC32520 ADK74771

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks