BMRB Entry 15592
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PDB ID: 2jy8
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR15592
MolProbity Validation Chart
NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry
Citation: Long, Jed; Gallagher, Thomas; Cavey, James; Sheppard, Paul; Ralston, Stuart; Layfield, Robert; Searle, Mark. "Ubiquitin recognition by the ubiquitin-associated domain of p62 involves a novel conformational switch" J. Biol. Chem. 283, 5427-5440 (2008).
PubMed: 18083707
Assembly members:
P62_UBA, polymer, 52 residues, Formula weight is not available
ubiquitin, polymer, 76 residues, Formula weight is not available
Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens
Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pGEX-4T-1
Entity Sequences (FASTA):
P62_UBA: GSPPEADPRLIESLSQMLSM
GFSDEGGWLTRLLQTKNYDI
GAALDTIQYSKH
ubiquitin: MQIFVKTLTGKTITLEVESS
DTIDNVKSKIQDKEGIPPDQ
QRLIFAGKQLEDGRTLSDYN
IQKESTLHLVLRLRGG
- assigned_chemical_shifts
- RDCs
| Data type | Count |
| 13C chemical shifts | 227 |
| 15N chemical shifts | 53 |
| 1H chemical shifts | 339 |
| residual dipolar couplings | 45 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | P62_UBA | 1 |
| 2 | ubiquitin | 2 |
Entities:
Entity 1, P62_UBA 52 residues - Formula weight is not available
P62_UBA
| 1 | GLY | SER | PRO | PRO | GLU | ALA | ASP | PRO | ARG | LEU | ||||
| 2 | ILE | GLU | SER | LEU | SER | GLN | MET | LEU | SER | MET | ||||
| 3 | GLY | PHE | SER | ASP | GLU | GLY | GLY | TRP | LEU | THR | ||||
| 4 | ARG | LEU | LEU | GLN | THR | LYS | ASN | TYR | ASP | ILE | ||||
| 5 | GLY | ALA | ALA | LEU | ASP | THR | ILE | GLN | TYR | SER | ||||
| 6 | LYS | HIS |
Entity 2, ubiquitin 76 residues - Formula weight is not available
| 1 | MET | GLN | ILE | PHE | VAL | LYS | THR | LEU | THR | GLY | ||||
| 2 | LYS | THR | ILE | THR | LEU | GLU | VAL | GLU | SER | SER | ||||
| 3 | ASP | THR | ILE | ASP | ASN | VAL | LYS | SER | LYS | ILE | ||||
| 4 | GLN | ASP | LYS | GLU | GLY | ILE | PRO | PRO | ASP | GLN | ||||
| 5 | GLN | ARG | LEU | ILE | PHE | ALA | GLY | LYS | GLN | LEU | ||||
| 6 | GLU | ASP | GLY | ARG | THR | LEU | SER | ASP | TYR | ASN | ||||
| 7 | ILE | GLN | LYS | GLU | SER | THR | LEU | HIS | LEU | VAL | ||||
| 8 | LEU | ARG | LEU | ARG | GLY | GLY |
Related Database Links:
| BMRB | 11149 11443 15591 17024 4769 4983 |
| PDB | 1Q02 2JY7 2JY8 2K0B 2KNV 2RRU 3B0F 1OTR 1Q0W 1VW8 1VW9 1VWU 1VWV 1VXV 1VXW 1VXY 1VXZ 1WR1 2G3Q 2JT4 2JWZ 2L00 3CMM 3J60 3J80 3J81 3L0W 3L10 3OLM 3U5C 3U5E 3U5G 3U5I 4B6A 4BYL 4BYN 4BYT 4BYU 4CUW 4HCN 4II3 4NNJ 4Q5E 4Q5H |
| DBJ | BAC26183 BAG35358 BAG53577 BAG65614 BAI46491 BAA02154 BAA03764 BAA05085 BAA05670 BAA76889 |
| EMBL | CAA69642 CAH90955 CAA07773 CAA10056 CAA11267 CAA11268 CAA21278 |
| GB | AAA93299 AAB02908 AAB17127 AAC50535 AAC52070 AAA03351 AAA19247 AAA32904 AAA32905 AAA32906 |
| REF | NP_001125548 NP_001135770 NP_001135771 NP_001156515 NP_001253287 NP_001031585 NP_001031824 NP_001042915 NP_001045980 NP_001049479 |
| SP | O08623 Q13501 Q5RBA5 Q64337 B9DHA6 P05759 P0C016 P0C224 P0C8R3 |
| TPG | DAA28341 DAA08405 DAA09244 DAA09283 DAA09489 DAA39608 |
| PIR | G85036 JS0657 S28426 S42643 S49332 |
| PRF | 1101405A 1207189A 1515347A 1603402A 1604470A |
| TPD | FAA00316 FAA00317 FAA00318 FAA00319 |
| TPE | CBF76581 CBF85986 |
| AlphaFold | O08623 Q13501 Q5RBA5 Q64337 B9DHA6 P05759 P0C016 P0C224 P0C8R3 |
Download HSQC peak lists in one of the following formats:
CSV: Backbone
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SPARKY: Backbone
or all simulated peaks