BMRB Entry 11101

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PDB ID: 2dj1
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11101
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

The solution structure of the first thioredoxin domain of mouse Protein disulfide-isomerase A4

Deposition date:

2010-02-18

Original release date:

2011-02-17

Authors:

Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "The solution structure of the first thioredoxin domain of mouse Protein disulfide-isomerase A4" .

Assembly members:

Assembly members:
1st thioredoxin domain, polymer, 140 residues, Formula weight is not available

Natural source:

Natural source: Common Name: house mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: P050509-10

Entity Sequences (FASTA):

Entity Sequences (FASTA):
1st thioredoxin domain: GSSGSSGDDDLEVKEENGVW VLNDGNFDNFVADKDTVLLE FYAPWCGHCKQFAPEYEKIA STLKDNDPPIAVAKIDATSA SMLASKFDVSGYPTIKILKK GQAVDYDGSRTQEEIVAKVR EVSQPDWTPPPEVTSGPSSG

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	600
15N chemical shifts	137
1H chemical shifts	903

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	1st thioredoxin domain	1

Entities:

Entity 1, 1st thioredoxin domain 140 residues - Formula weight is not available

1	GLY	SER	SER	GLY	SER	SER	GLY	ASP	ASP	ASP
2	LEU	GLU	VAL	LYS	GLU	GLU	ASN	GLY	VAL	TRP
3	VAL	LEU	ASN	ASP	GLY	ASN	PHE	ASP	ASN	PHE
4	VAL	ALA	ASP	LYS	ASP	THR	VAL	LEU	LEU	GLU
5	PHE	TYR	ALA	PRO	TRP	CYS	GLY	HIS	CYS	LYS
6	GLN	PHE	ALA	PRO	GLU	TYR	GLU	LYS	ILE	ALA
7	SER	THR	LEU	LYS	ASP	ASN	ASP	PRO	PRO	ILE
8	ALA	VAL	ALA	LYS	ILE	ASP	ALA	THR	SER	ALA
9	SER	MET	LEU	ALA	SER	LYS	PHE	ASP	VAL	SER
10	GLY	TYR	PRO	THR	ILE	LYS	ILE	LEU	LYS	LYS
11	GLY	GLN	ALA	VAL	ASP	TYR	ASP	GLY	SER	ARG
12	THR	GLN	GLU	GLU	ILE	VAL	ALA	LYS	VAL	ARG
13	GLU	VAL	SER	GLN	PRO	ASP	TRP	THR	PRO	PRO
14	PRO	GLU	VAL	THR	SER	GLY	PRO	SER	SER	GLY

Name	Sample	Sample state	Sample conditions
3D 15N-SEPARATED NOESY	sample_1	isotropic	sample_conditions_1
3D 13C-SEPARATED NOESY	sample_1	isotropic	sample_conditions_1

BMRB Entry 11101

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links:

1	GLY	SER	SER	GLY	SER	SER	GLY	ASP	ASP	ASP
2	LEU	GLU	VAL	LYS	GLU	GLU	ASN	GLY	VAL	TRP
3	VAL	LEU	ASN	ASP	GLY	ASN	PHE	ASP	ASN	PHE
4	VAL	ALA	ASP	LYS	ASP	THR	VAL	LEU	LEU	GLU
5	PHE	TYR	ALA	PRO	TRP	CYS	GLY	HIS	CYS	LYS
6	GLN	PHE	ALA	PRO	GLU	TYR	GLU	LYS	ILE	ALA
7	SER	THR	LEU	LYS	ASP	ASN	ASP	PRO	PRO	ILE
8	ALA	VAL	ALA	LYS	ILE	ASP	ALA	THR	SER	ALA
9	SER	MET	LEU	ALA	SER	LYS	PHE	ASP	VAL	SER
10	GLY	TYR	PRO	THR	ILE	LYS	ILE	LEU	LYS	LYS
11	GLY	GLN	ALA	VAL	ASP	TYR	ASP	GLY	SER	ARG
12	THR	GLN	GLU	GLU	ILE	VAL	ALA	LYS	VAL	ARG
13	GLU	VAL	SER	GLN	PRO	ASP	TRP	THR	PRO	PRO
14	PRO	GLU	VAL	THR	SER	GLY	PRO	SER	SER	GLY

1	GLY	SER	SER	GLY	SER	SER	GLY	ASP	ASP	ASP
2	LEU	GLU	VAL	LYS	GLU	GLU	ASN	GLY	VAL	TRP
3	VAL	LEU	ASN	ASP	GLY	ASN	PHE	ASP	ASN	PHE
4	VAL	ALA	ASP	LYS	ASP	THR	VAL	LEU	LEU	GLU
5	PHE	TYR	ALA	PRO	TRP	CYS	GLY	HIS	CYS	LYS
6	GLN	PHE	ALA	PRO	GLU	TYR	GLU	LYS	ILE	ALA
7	SER	THR	LEU	LYS	ASP	ASN	ASP	PRO	PRO	ILE
8	ALA	VAL	ALA	LYS	ILE	ASP	ALA	THR	SER	ALA
9	SER	MET	LEU	ALA	SER	LYS	PHE	ASP	VAL	SER
10	GLY	TYR	PRO	THR	ILE	LYS	ILE	LEU	LYS	LYS
11	GLY	GLN	ALA	VAL	ASP	TYR	ASP	GLY	SER	ARG
12	THR	GLN	GLU	GLU	ILE	VAL	ALA	LYS	VAL	ARG
13	GLU	VAL	SER	GLN	PRO	ASP	TRP	THR	PRO	PRO
14	PRO	GLU	VAL	THR	SER	GLY	PRO	SER	SER	GLY

1	GLY	SER	SER	GLY	SER	SER	GLY	ASP	ASP	ASP
2	LEU	GLU	VAL	LYS	GLU	GLU	ASN	GLY	VAL	TRP
3	VAL	LEU	ASN	ASP	GLY	ASN	PHE	ASP	ASN	PHE
4	VAL	ALA	ASP	LYS	ASP	THR	VAL	LEU	LEU	GLU
5	PHE	TYR	ALA	PRO	TRP	CYS	GLY	HIS	CYS	LYS
6	GLN	PHE	ALA	PRO	GLU	TYR	GLU	LYS	ILE	ALA
7	SER	THR	LEU	LYS	ASP	ASN	ASP	PRO	PRO	ILE
8	ALA	VAL	ALA	LYS	ILE	ASP	ALA	THR	SER	ALA
9	SER	MET	LEU	ALA	SER	LYS	PHE	ASP	VAL	SER
10	GLY	TYR	PRO	THR	ILE	LYS	ILE	LEU	LYS	LYS
11	GLY	GLN	ALA	VAL	ASP	TYR	ASP	GLY	SER	ARG
12	THR	GLN	GLU	GLU	ILE	VAL	ALA	LYS	VAL	ARG
13	GLU	VAL	SER	GLN	PRO	ASP	TRP	THR	PRO	PRO
14	PRO	GLU	VAL	THR	SER	GLY	PRO	SER	SER	GLY