BMRB Entry 10195

Name: Solution structure of the second SH3 domain of human Vinexin
Published: 2009-02-27

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PDB ID: 2yup
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR10195
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the second SH3 domain of human Vinexin

Deposition date:

2008-02-19

Original release date:

2009-02-27

Authors:

Abe, H.; Tochio, N.; Miyamoto, K.; Saito, K.; Sasagawa, A.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Abe, H.; Tochio, N.; Miyamoto, K.; Saito, K.; Sasagawa, A.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solution structure of the second SH3 domain of human Vinexin" .

Assembly members:

Assembly members:
SH3 domain, polymer, 90 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Vector: P050627-09

Entity Sequences (FASTA):

Entity Sequences (FASTA):
SH3 domain: GSSGSSGKPPTYQVLEYGEA VAQYTFKGDLEVELSFRKGE HICLIRKVNENWYEGRITGT GRQGIFPASYVQVSREPRLR LCDDSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	356
15N chemical shifts	82
1H chemical shifts	571

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	SH3 domain	1

Entities:

Entity 1, SH3 domain 90 residues - Formula weight is not available

1	GLY	SER	SER	GLY	SER	SER	GLY	LYS	PRO	PRO
2	THR	TYR	GLN	VAL	LEU	GLU	TYR	GLY	GLU	ALA
3	VAL	ALA	GLN	TYR	THR	PHE	LYS	GLY	ASP	LEU
4	GLU	VAL	GLU	LEU	SER	PHE	ARG	LYS	GLY	GLU
5	HIS	ILE	CYS	LEU	ILE	ARG	LYS	VAL	ASN	GLU
6	ASN	TRP	TYR	GLU	GLY	ARG	ILE	THR	GLY	THR
7	GLY	ARG	GLN	GLY	ILE	PHE	PRO	ALA	SER	TYR
8	VAL	GLN	VAL	SER	ARG	GLU	PRO	ARG	LEU	ARG
9	LEU	CYS	ASP	ASP	SER	GLY	PRO	SER	SER	GLY

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	sample_1	isotropic	condition_1
3D 13C-separated NOESY	sample_1	isotropic	condition_1

BMRB Entry 10195

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links:

1	GLY	SER	SER	GLY	SER	SER	GLY	LYS	PRO	PRO
2	THR	TYR	GLN	VAL	LEU	GLU	TYR	GLY	GLU	ALA
3	VAL	ALA	GLN	TYR	THR	PHE	LYS	GLY	ASP	LEU
4	GLU	VAL	GLU	LEU	SER	PHE	ARG	LYS	GLY	GLU
5	HIS	ILE	CYS	LEU	ILE	ARG	LYS	VAL	ASN	GLU
6	ASN	TRP	TYR	GLU	GLY	ARG	ILE	THR	GLY	THR
7	GLY	ARG	GLN	GLY	ILE	PHE	PRO	ALA	SER	TYR
8	VAL	GLN	VAL	SER	ARG	GLU	PRO	ARG	LEU	ARG
9	LEU	CYS	ASP	ASP	SER	GLY	PRO	SER	SER	GLY

1	GLY	SER	SER	GLY	SER	SER	GLY	LYS	PRO	PRO
2	THR	TYR	GLN	VAL	LEU	GLU	TYR	GLY	GLU	ALA
3	VAL	ALA	GLN	TYR	THR	PHE	LYS	GLY	ASP	LEU
4	GLU	VAL	GLU	LEU	SER	PHE	ARG	LYS	GLY	GLU
5	HIS	ILE	CYS	LEU	ILE	ARG	LYS	VAL	ASN	GLU
6	ASN	TRP	TYR	GLU	GLY	ARG	ILE	THR	GLY	THR
7	GLY	ARG	GLN	GLY	ILE	PHE	PRO	ALA	SER	TYR
8	VAL	GLN	VAL	SER	ARG	GLU	PRO	ARG	LEU	ARG
9	LEU	CYS	ASP	ASP	SER	GLY	PRO	SER	SER	GLY

1	GLY	SER	SER	GLY	SER	SER	GLY	LYS	PRO	PRO
2	THR	TYR	GLN	VAL	LEU	GLU	TYR	GLY	GLU	ALA
3	VAL	ALA	GLN	TYR	THR	PHE	LYS	GLY	ASP	LEU
4	GLU	VAL	GLU	LEU	SER	PHE	ARG	LYS	GLY	GLU
5	HIS	ILE	CYS	LEU	ILE	ARG	LYS	VAL	ASN	GLU
6	ASN	TRP	TYR	GLU	GLY	ARG	ILE	THR	GLY	THR
7	GLY	ARG	GLN	GLY	ILE	PHE	PRO	ALA	SER	TYR
8	VAL	GLN	VAL	SER	ARG	GLU	PRO	ARG	LEU	ARG
9	LEU	CYS	ASP	ASP	SER	GLY	PRO	SER	SER	GLY