BMRB Entry 6933

Name: Complete Chemical Shift Assignment for the Neurabin PDZ Domain
Published: 2007-04-11

Click here to enlarge.

PDB ID: 2fn5
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6933
MolProbity Validation Chart

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title:

Complete Chemical Shift Assignment for the Neurabin PDZ Domain

Deposition date:

2006-01-06

Original release date:

2007-04-11

Authors:

Dancheck, Barbara; Peti, Wolfgang

Citation:

Citation: Kelker, M.; Dancheck, Barbara; Ju, T.; Kessler, R.; Hudak, J.; Nairn, A.; Peti, Wolfgang. "Structural basis for spinophilin-neurabin receptor interaction." Biochemistry. 46, 2333-2344 (2007).
PubMed: 17279777

Assembly members:

Assembly members:
Neurabin PDZ Domain, polymer, 94 residues, Formula weight is not available

Natural source:

Natural source: Common Name: rat Taxonomy ID: 10116 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Rattus norvegicus

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Neurabin PDZ Domain: GHMELFPVELEKDEDGLGIS IIGMGVGADAGLEKLGIFVK TVTEGGAAQRDGRIQVNDQI VEVDGISLVGVTQNFAATVL RNTKGNVRFVIGRE

Data sets:

assigned_chemical_shifts
- chem_shift_list_1

Data type	Count
13C chemical shifts	369
15N chemical shifts	99
1H chemical shifts	637

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Neurabin PDZ	1

Entities:

Entity 1, Neurabin PDZ 94 residues - Formula weight is not available

1

GLY

HIS

MET

GLU

LEU

PHE

PRO

VAL

GLU

LEU

2

GLU

LYS

ASP

GLU

ASP

GLY

LEU

GLY

ILE

SER

3

ILE

GLY

MET

GLY

VAL

GLY

ALA

ASP

ALA

4

GLY

LEU

GLU

LYS

LEU

GLY

ILE

PHE

VAL

LYS

5

THR

VAL

THR

GLU

GLY

ALA

GLN

ARG

6

ASP

GLY

ARG

ILE

GLN

VAL

ASN

ASP

GLN

ILE

7

VAL

GLU

VAL

ASP

GLY

ILE

SER

LEU

VAL

GLY

8

VAL

THR

GLN

ASN

PHE

ALA

THR

VAL

LEU

9

ARG

ASN

THR

LYS

GLY

ASN

VAL

ARG

PHE

VAL

10

ILE

GLY

ARG

GLU

Samples:

sample_1: Neurabin PDZ Domain 2 mM; Na phosphate 20 mM; NaCl 50 mM

sample_2: Neurabin PDZ Domain, [U-99% 15N], 3.5 mM; Na phosphate 20 mM; NaCl 50 mM

sample_3: Neurabin PDZ Domain, [U-99% 15N; U-99% 13C], 3.8 mM; Na phosphate 20 mM; NaCl 50 mM

conditions_1: ionic strength: 20 mM; pH: 6.5; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
1H15N_HSQC	not available	not available	conditions_1
CbCaCoNH	not available	not available	conditions_1
HNCaCb	not available	not available	conditions_1
HbHaCoNH	not available	not available	conditions_1
HCCH Tocsy	not available	not available	conditions_1
1H15N NOESY	not available	not available	conditions_1
HNCo	not available	not available	conditions_1

Software:

CARA v1.3.2, Cara - peak assignment

TOPSPIN v1.3, Bruker - processing spectra

ATHNOS-CANDID v1, . - automated peak picking

NMR spectrometers:

Bruker AVANCE-DRX 600 MHz
Bruker Avance II 500 MHz

BMRB	11202
PDB	1WF8 2FN5 3HVQ
DBJ	BAA86536 BAC77245 BAE22449 BAE23620
GB	AAC53454 AAH53748 AAI18112 AAI30450 AAI44110
REF	NP_001069621 NP_001159632 NP_001159633 NP_001159634 NP_001159635
SP	O35867 Q9ULJ8
TPG	DAA30807
AlphaFold	O35867 Q9ULJ8