BMRB Entry 6356

Name: Yeast frataxin solution structure
Published: 2005-05-03

Click here to enlarge.

PDB ID: 2ga5
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6356
MolProbity Validation Chart

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title:

Yeast frataxin solution structure

Deposition date:

2004-10-14

Original release date:

2005-05-03

Authors:

He, Y.; Alam, S.; Proteasa, S.; Zhang, Y.; Lesuisse, E.; Dancis, A.; Stemmler, T.

Citation:

Citation: He, Yanan; Alam, Steve; Proteasa, Simona; Zhang, Yan; Lesuisse, Emmanual; Dancis, Andy; Stemmler, Timothy. "Yeast frataxin solution structure, iron binding and ferrochelatase interaction" Biochemistry 43, 16254-16262 (2004).
PubMed: 15610019

Assembly members:

Assembly members:
Saccharomyces cerevisiae, polymer, 123 residues, 13783 Da.

Natural source:

Natural source: Common Name: Baker's yeast Taxonomy ID: 4932 Superkingdom: Eukaryota Kingdom: Fungi Genus/species: Saccharomyces cerevisiae

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Saccharomyces cerevisiae: MESSTDGQVVPQEVLNLPLE KYHEEADDYLDHLLDSLEEL SEAHPDCIPDVELSHGVMTL EIPAFGTYVINKQPPNKQIW LASPLSGPNRFDLLNGEWVS LRNGTKLTDILTEEVEKAIS KSQ

Data sets:

assigned_chemical_shifts
- chemical_shift_set_1

Data type	Count
1H chemical shifts	744
13C chemical shifts	510
15N chemical shifts	115

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Yfh1 monomer	1

Entities:

Entity 1, Yfh1 monomer 123 residues - 13783 Da.

1

MET

GLU

SER

THR

ASP

GLY

GLN

VAL

2

PRO

GLN

GLU

VAL

LEU

ASN

LEU

PRO

LEU

GLU

3

LYS

TYR

HIS

GLU

ALA

ASP

TYR

LEU

4

ASP

HIS

LEU

ASP

SER

LEU

GLU

LEU

5

SER

GLU

ALA

HIS

PRO

ASP

CYS

ILE

PRO

ASP

6

VAL

GLU

LEU

SER

HIS

GLY

VAL

MET

THR

LEU

7

GLU

ILE

PRO

ALA

PHE

GLY

THR

TYR

VAL

ILE

8

ASN

LYS

GLN

PRO

ASN

LYS

GLN

ILE

TRP

9

LEU

ALA

SER

PRO

LEU

SER

GLY

PRO

ASN

ARG

10

PHE

ASP

LEU

ASN

GLY

GLU

TRP

VAL

SER

11

LEU

ARG

ASN

GLY

THR

LYS

LEU

THR

ASP

ILE

12

LEU

THR

GLU

VAL

GLU

LYS

ALA

ILE

SER

13

LYS

SER

GLN

Samples:

sample_1: Saccharomyces cerevisiae 1 mM; sodium phosphate buffer 5 mM; DTT 2 mM; H2O 90%; D2O 10%

sample_cond_1: pH: 7; temperature: 298 K; ionic strength: 25 mM

Experiments:

Name	Sample	Sample state	Sample conditions
HSQC	not available	not available	not available
HNCACB	not available	not available	not available
CBCACONH	not available	not available	not available
HNCO	not available	not available	not available
HCCONH-TOCSY	not available	not available	not available
CCONH-TOCSY	not available	not available	not available
HCCH-TOCSY	not available	not available	not available
2D-1H/1H NOESY	not available	not available	not available
3D 15N-seperated NOESY	not available	not available	not available
3D 13C-seperated NOESY	not available	not available	not available

Software:

VNMR v6.1 - collection

FELIX v950 - processing

DYANA v1.5 - structure solution

CNS v1.1 - refinement

XEASY v1.3.13 - data analysis

NMR spectrometers:

Varian INOVA 600 MHz
Varian INOVA 720 MHz

BMRB	17068 17641
PDB	2FQL 2GA5 3OEQ 3OER 4EC2
DBJ	GAA22128
EMBL	CAA98688 CAY78388
GB	AAS56486 AHY74893 EDN60240 EDV08389 EDZ73347
REF	NP_010163
SP	Q07540
TPG	DAA11740
AlphaFold	Q07540