BMRB Entry 6305

Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6305

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Mainchain proton, carbon and nitrogen chemical shifts for the C-domain of human RanGAP1

Deposition date:

2004-08-27

Original release date:

2004-11-29

Authors:

Macauley, Matthew; Errington, Wesley; Okon, Mark; Scharpf, Manuela; Mackereth, Cameron; Schulman, Brenda; McIntosh, Lawrence

Citation:

Citation: Macauley, Matthew; Errington, Wesley; Okon, Mark; Scharpf, Manuela; Mackereth, Cameron; Schulman, Brenda; McIntosh, Lawrence. "Structural and Dynamic Independence of Isopeptide-linked RanGAP1 and SUMO-1" J. Biol. Chem. 279, 49131-49137 (2004).
PubMed: 15355965

Assembly members:

Assembly members:
RanGAP1, polymer, 172 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Animalia Genus/species: Homo sapian

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET28a

Entity Sequences (FASTA):

Entity Sequences (FASTA):
RanGAP1: GSHMGEPAPVLSSPPPADVS TFLAFPSPEKLLRLGPKSSV LIAQQTDTSDPEKVVSAFLK VSSVFKDEATVTMAVQDAVD ALMQKAFNSSSFNSNTFLTR LLVHMGLLKSEDKVKAIANL YGPLMALNHMVQQDYFPKAL APLLLAFVTKPNSALESCSF ARHSLLQTLYKV

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts

Data type	Count
13C chemical shifts	459
15N chemical shifts	152
1H chemical shifts	152

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	RanGAP1 C-domain	1

Entities:

Entity 1, RanGAP1 C-domain 172 residues - Formula weight is not available

1

GLY

SER

HIS

MET

GLY

GLU

PRO

ALA

PRO

VAL

2

LEU

SER

PRO

ALA

ASP

VAL

SER

3

THR

PHE

LEU

ALA

PHE

PRO

SER

PRO

GLU

LYS

4

LEU

ARG

LEU

GLY

PRO

LYS

SER

VAL

5

LEU

ILE

ALA

GLN

THR

ASP

THR

SER

ASP

6

PRO

GLU

LYS

VAL

SER

ALA

PHE

LEU

LYS

7

VAL

SER

VAL

PHE

LYS

ASP

GLU

ALA

THR

8

VAL

THR

MET

ALA

VAL

GLN

ASP

ALA

VAL

ASP

9

ALA

LEU

MET

GLN

LYS

ALA

PHE

ASN

SER

10

SER

PHE

ASN

SER

ASN

THR

PHE

LEU

THR

ARG

11

LEU

VAL

HIS

MET

GLY

LEU

LYS

SER

12

GLU

ASP

LYS

VAL

LYS

ALA

ILE

ALA

ASN

LEU

13

TYR

GLY

PRO

LEU

MET

ALA

LEU

ASN

HIS

MET

14

VAL

GLN

ASP

TYR

PHE

PRO

LYS

ALA

LEU

15

ALA

PRO

LEU

ALA

PHE

VAL

THR

LYS

16

PRO

ASN

SER

ALA

LEU

GLU

SER

CYS

SER

PHE

17

ALA

ARG

HIS

SER

LEU

GLN

THR

LEU

TYR

18

LYS

VAL

Samples:

sample: RanGAP1; KCl 100 mM; KPhos 10 mM; DTT 2 mM; D2O 10%

sample_conditions: pH: 6.0; temperature: 303 K

Experiments:

Name	Sample	Sample state	Sample conditions
1H-15N HSQC	not available	not available	not available
HNCO	not available	not available	not available
HNCACB	not available	not available	not available
CBCA(CO)NH	not available	not available	not available
15N-editted NOESY-HSQC	not available	not available	not available
15N-editted TOCSY-HSQC	not available	not available	not available

Software:

NMRpipe -

NMRView -

NMR spectrometers:

Varian Inova 600 MHz

BMRB	6306
PDB	1Z5S 2GRN 2GRO 2GRP 2GRQ 2GRR 2IO2 2IO3 2IY0 3UIN 3UIO 3UIP
DBJ	BAB47464 BAG10161 BAG63578 BAG64552
EMBL	CAA57714 CAG30443 CAK54588 CAK54887
GB	AAH04990 AAH14044 AAH41396 AIC55014 EAW60420
REF	NP_001265580 NP_002874 XP_005261752 XP_005261753 XP_006724352
SP	P46060
AlphaFold	P46060