BMRB Entry 5968

Name: NMR structure of the human dematin headpiece domain
Published: 2004-02-12

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PDB ID: 1qzp
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR5968
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

NMR structure of the human dematin headpiece domain

Deposition date:

2003-10-13

Original release date:

2004-02-12

Authors:

Frank, B.; Vardar, D.; Chishti, A.; McKnight, C.

Citation:

Citation: Frank, B.; Vardar, D.; Chishti, A.; McKnight, C.. "The NMR Structure Dematin Headpiece Reveals a Dynamic Loop that is Conformationally Altered Upon Phosphorylation at a Distal Site " J. Biol. Chem. ., .-..
PubMed: 14660664

Assembly members:

Assembly members:
dematin, polymer, 68 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
dematin: PGLQIYPYEMLVVTNKGRTK LPPGVDRMRLERHLSAEDFS RVFAMSPEEFGKLALWKRNE LKKKASLF

Data sets:

assigned_chemical_shifts
- chemical_shift_set_1

Data type	Count
1H chemical shifts	487
13C chemical shifts	291
15N chemical shifts	73

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	dematin	1

Entities:

Entity 1, dematin 68 residues - Formula weight is not available

1

PRO

GLY

LEU

GLN

ILE

TYR

PRO

TYR

GLU

MET

2

LEU

VAL

THR

ASN

LYS

GLY

ARG

THR

LYS

3

LEU

PRO

GLY

VAL

ASP

ARG

MET

ARG

LEU

4

GLU

ARG

HIS

LEU

SER

ALA

GLU

ASP

PHE

SER

5

ARG

VAL

PHE

ALA

MET

SER

PRO

GLU

PHE

6

GLY

LYS

LEU

ALA

LEU

TRP

LYS

ARG

ASN

GLU

7

LEU

LYS

ALA

SER

LEU

PHE

Samples:

sample_1: dematin, [U-13C; U-15N], 1 mM; phosphat 10 mM; TMSP 0.5 mM; sodium azide 0.01%; D2O 10%

sample_2: dematin, [U-15N], 4 mM; phosphat 10 mM; TMSP 0.5 mM; sodium azide 0.01%; D2O 10%

sample_3: dematin, [U-10% 13C; U-15N], 0.7 mM; phosphat 10 mM; TMSP 0.5 mM; sodium azide 0.01%; D2O 10%

sample_cond_1: pH: 6.0; temperature: 293 K; ionic strength: 10 mM; pressure: 1 atm

Experiments:

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	not available	not available	not available
HNCA	not available	not available	not available
HNCOCA	not available	not available	not available
HNCO	not available	not available	not available
HNCACO	not available	not available	not available
3D 15N-separated NOESY	not available	not available	not available
3D 15N-separated TOCSY	not available	not available	not available
HCCH-COSY	not available	not available	not available
2D NOESY	not available	not available	not available
2D TOCSY	not available	not available	not available

Software:

CNS v1.0 - structure solution

NMRPipe vsgi6x - processing

XWINNMR v3.1 - collection

NMRView v4.1.2 - data analysis

MOLMOL v2k.2 - refinement

NMR spectrometers:

Bruker DMX 500 MHz

BMRB	6718
PDB	1QZP 1ZV6
DBJ	BAD92955 BAE28799 BAE34638 BAE37092 BAE38123
EMBL	CAH92510 CAH93265 CAH93400
GB	AAA58438 AAC50223 AAD34233 AAD38412 AAH06318
REF	NP_001029603 NP_001107607 NP_001107608 NP_001107609 NP_001107610
SP	Q08495 Q5R4B6 Q9WV69
TPG	DAA26732
AlphaFold	Q08495 Q5R4B6 Q9WV69