BMRB Entry 5907

Name: Assignment of 1H, 13C and 15N Resonances of the Human Ku80 C-terminal Domain
Published: 2004-08-30

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PDB ID: 1rw2
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR5907
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Assignment of 1H, 13C and 15N Resonances of the Human Ku80 C-terminal Domain

Deposition date:

2003-08-19

Original release date:

2004-08-30

Authors:

Zhang, Ziming; Hu, Weidong; Chen, Yuan

Citation:

Citation: Zhang, Ziming; Hu, Weidong; Cano, L.; Lee, T.; Chen, D.; Chen, Yuan. "Solution structure of the C-terminal domain of Ku80 suggests important sites for protein-protein interactions." Structure (Camb) 12, 495-502 (2004).
PubMed: 15016365

Assembly members:

Assembly members:
Human Ku80 C-terminal Domain, polymer, 152 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Human Ku80 C-terminal Domain: MHHHHHHKLKTEQGGAHFSV SSLAEGSVTSVGSVNPAENF RVLVKQKKASFEEASNQLIN HIEQFLDTNETPYFMKSIDC IRAFREEAIKFSEEQRFNNF LKALQEKVEIKQLNHFWEIV VQDGITLITKEEASGSSVTA EEAKKFLAPKDK

Data sets:

assigned_chemical_shifts
- chemical_shifts_1

Data type	Count
13C chemical shifts	601
15N chemical shifts	155
1H chemical shifts	977

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Ku80 CTD	1

Entities:

Entity 1, Ku80 CTD 152 residues - Formula weight is not available

1

MET

HIS

LYS

LEU

LYS

2

THR

GLU

GLN

GLY

ALA

HIS

PHE

SER

VAL

3

SER

LEU

ALA

GLU

GLY

SER

VAL

THR

SER

4

VAL

GLY

SER

VAL

ASN

PRO

ALA

GLU

ASN

PHE

5

ARG

VAL

LEU

VAL

LYS

GLN

LYS

ALA

SER

6

PHE

GLU

ALA

SER

ASN

GLN

LEU

ILE

ASN

7

HIS

ILE

GLU

GLN

PHE

LEU

ASP

THR

ASN

GLU

8

THR

PRO

TYR

PHE

MET

LYS

SER

ILE

ASP

CYS

9

ILE

ARG

ALA

PHE

ARG

GLU

ALA

ILE

LYS

10

PHE

SER

GLU

GLN

ARG

PHE

ASN

PHE

11

LEU

LYS

ALA

LEU

GLN

GLU

LYS

VAL

GLU

ILE

12

LYS

GLN

LEU

ASN

HIS

PHE

TRP

GLU

ILE

VAL

13

VAL

GLN

ASP

GLY

ILE

THR

LEU

ILE

THR

LYS

14

GLU

ALA

SER

GLY

SER

VAL

THR

ALA

15

GLU

ALA

LYS

PHE

LEU

ALA

PRO

LYS

16

ASP

LYS

Samples:

Sample_1: Human Ku80 C-terminal Domain1.0 – 1.5 mM

Experiment_conditions: pH: 6.0; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
HNCO	Sample_1	not available	Experiment_conditions
HN(CA)CO	Sample_1	not available	Experiment_conditions
CBCA(CO)NH	Sample_1	not available	Experiment_conditions
HNCACB	Sample_1	not available	Experiment_conditions
C(CO)NH	Sample_1	not available	Experiment_conditions
HC(CO)NH	Sample_1	not available	Experiment_conditions
TOCSY	Sample_1	not available	Experiment_conditions
HCCHTOCSY	Sample_1	not available	Experiment_conditions

Software:

No software information available

NMR spectrometers:

unknown unknown 0 MHz

BMRB	5912
PDB	1Q2Z 1RW2
DBJ	BAD96323 BAE01114 BAF83429 BAH24115
EMBL	CAA40736 CAH92321
GB	AAA36154 AAA59475 AAH19027 AAH95442 AAR11279
REF	NP_001126362 NP_001244295 NP_066964 XP_001151873 XP_003254095
SP	P13010
AlphaFold	P13010