BMRB Entry 5792

Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR5792

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Assignment of the 1H, 15N and 13C resonances of E. coli frataxin orthologue, CyaY

Deposition date:

2003-05-06

Original release date:

2004-06-24

Authors:

Nair, Margie; Adinolfi, Salvatore; Kelly, Geoff; Frenkiel, Thomas; Pastore, Annalisa

Citation:

Citation: Nair, Margie; Adinolfi, Salvatore; Kelly, Geoff; Frenkiel, Thomas; Pastore, Annalisa. "Letter to the Editor: NMR assignment of the 1H, 15N and 13C resonances of E. coli frataxin orthologue, CyaY " J. Biomol. NMR 27, 403-404 (2003).
PubMed: 14512742

Assembly members:

Assembly members:
Escherichia coli CyaY, polymer, 109 residues, 12415 Da.

Natural source:

Natural source: Common Name: E. coli Taxonomy ID: 562 Superkingdom: Eubacteria Kingdom: not available Genus/species: Escherichia coli

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Escherichia coli CyaY: GAMGNDSEFHRLADQLWLTI EERLDDWDGDSDIDCEINGG VLTITFENGSKIIINRQEPL HQVWLATKQGGYHFDLKGDE WICDRSGETFWDLLEQAATQ QAGETVSFR

Data sets:

assigned_chemical_shifts
- CSR1

Data type	Count
13C chemical shifts	434
15N chemical shifts	116
1H chemical shifts	691

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	CyaY monomer	1

Entities:

Entity 1, CyaY monomer 109 residues - 12415 Da.

1

GLY

ALA

MET

GLY

ASN

ASP

SER

GLU

PHE

HIS

2

ARG

LEU

ALA

ASP

GLN

LEU

TRP

LEU

THR

ILE

3

GLU

ARG

LEU

ASP

TRP

ASP

GLY

ASP

4

SER

ASP

ILE

ASP

CYS

GLU

ILE

ASN

GLY

5

VAL

LEU

THR

ILE

THR

PHE

GLU

ASN

GLY

SER

6

LYS

ILE

ASN

ARG

GLN

GLU

PRO

LEU

7

HIS

GLN

VAL

TRP

LEU

ALA

THR

LYS

GLN

GLY

8

GLY

TYR

HIS

PHE

ASP

LEU

LYS

GLY

ASP

GLU

9

TRP

ILE

CYS

ASP

ARG

SER

GLY

GLU

THR

PHE

10

TRP

ASP

LEU

GLU

GLN

ALA

THR

GLN

11

GLN

ALA

GLY

GLU

THR

VAL

SER

PHE

ARG

Samples:

15N_sample: Escherichia coli CyaY, [U-15N], 1 – 2 mM

13C_sample: Escherichia coli CyaY, [U-13C; U-15N], 1 – 2 mM

condition_set-1: pH*: 7; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
1H-1H-15N NOESY-HSQC	not available	not available	condition_set-1
1H-1H-13C TOCSY-HSQC	not available	not available	condition_set-1
3D HNHA	not available	not available	condition_set-1
3D HNHB	not available	not available	condition_set-1
3D HNCA	not available	not available	condition_set-1
3D HN(CO)CA	not available	not available	condition_set-1
3D HNC0	not available	not available	condition_set-1
3D CBCA(CO)NH	not available	not available	condition_set-1
1H-1H-13C HCCH-TOCSY	not available	not available	condition_set-1
1H-1H-13C NOESY-HSQC	not available	not available	condition_set-1
HCC(CO)NH	not available	not available	condition_set-1

Software:

XEASY v1.2 - peak assignment

NMRPipe - spectral processing

NMR spectrometers:

Varian UnityPlus 500 MHz
Varian Unity 600 MHz
Varian Inova 600 MHz
Varian Inova 800 MHz

BMRB	15237 15244
PDB	1EW4 1SOY 2EFF 2P1X
DBJ	BAB38160 BAE77494 BAG79612 BAI27941 BAI33064
EMBL	CAA47281 CAP78250 CAQ34148 CAQ91159 CAR00776
GB	AAA67603 AAC76810 AAG58999 AAN45316 AAN83159
REF	NP_290435 NP_312764 NP_418251 NP_709609 NP_756585
SP	A1AHX3 A7ZU09 A8A6R1 B1IW97 B1LLX7
AlphaFold	A1AHX3 A7ZU09 A8A6R1 B1IW97 B1LLX7