BMRB Entry 5758

Name: 1H, 13C and 15N chemical shift assignments for YqgF
Published: 2003-10-16

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PDB ID: 1ovq
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR5758
MolProbity Validation Chart

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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

1H, 13C and 15N chemical shift assignments for YqgF

Deposition date:

2003-03-27

Original release date:

2003-10-16

Authors:

Liu, Dingjiang; Repaka, Prasanti; Taremi, Shane; Wyss, Daniel

Citation:

Citation: Liu, Dingjiang; Wang, Yu-sen; Wyss, Daniel. "Solution structure of the hypothetical protein YqgF from Escherichia coli reveals an RNAse H fold" J. Biomol. NMR 27, 389-392 (2003).

Assembly members:

Assembly members:
YqgF, polymer, 147 residues, Formula weight is not available

Natural source:

Natural source: Common Name: E. coli Taxonomy ID: 562 Superkingdom: Eubacteria Kingdom: not available Genus/species: Escherichia coli

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
YqgF: RGSMADIGSMSGTLLAFDFG TKSIGVAVGQRITGTARPLP AIKAQDGTPDWNIIERLLKE WQPDEIIVGLPLNMDGTEQP LTARARKFANRIHGRFGVEV KLHDERLSTVEARSGLFEQG GYRALNKGKVDSASAVIILE SYFEQGY

Data sets:

assigned_chemical_shifts
- cs_set_1

Data type	Count
1H chemical shifts	778
13C chemical shifts	470
15N chemical shifts	122

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	YqgF	1

Entities:

Entity 1, YqgF 147 residues - Formula weight is not available

1

ARG

GLY

SER

MET

ALA

ASP

ILE

GLY

SER

MET

2

SER

GLY

THR

LEU

ALA

PHE

ASP

PHE

GLY

3

THR

LYS

SER

ILE

GLY

VAL

ALA

VAL

GLY

GLN

4

ARG

ILE

THR

GLY

THR

ALA

ARG

PRO

LEU

PRO

5

ALA

ILE

LYS

ALA

GLN

ASP

GLY

THR

PRO

ASP

6

TRP

ASN

ILE

GLU

ARG

LEU

LYS

GLU

7

TRP

GLN

PRO

ASP

GLU

ILE

VAL

GLY

LEU

8

PRO

LEU

ASN

MET

ASP

GLY

THR

GLU

GLN

PRO

9

LEU

THR

ALA

ARG

ALA

ARG

LYS

PHE

ALA

ASN

10

ARG

ILE

HIS

GLY

ARG

PHE

GLY

VAL

GLU

VAL

11

LYS

LEU

HIS

ASP

GLU

ARG

LEU

SER

THR

VAL

12

GLU

ALA

ARG

SER

GLY

LEU

PHE

GLU

GLN

GLY

13

GLY

TYR

ARG

ALA

LEU

ASN

LYS

GLY

LYS

VAL

14

ASP

SER

ALA

SER

ALA

VAL

ILE

LEU

GLU

15

SER

TYR

PHE

GLU

GLN

GLY

TYR

Samples:

sample_1: YqgF, [U-15N], 0.3 – 1.0 mM; KiPO4 75 mM

sample_2: YqgF, [U-13C; U-15N], 0.5 – 1.0 mM; KiPO4 75 mM

Ex-cond_1: pH: 7.5; temperature: 298 K; ionic strength: 0.45 M

Experiments:

Name	Sample	Sample state	Sample conditions
1H-15N NOESY	not available	not available	not available
1H-15N TOCSY	not available	not available	not available
HNCA	not available	not available	not available
HN(CO)CA	not available	not available	not available
HN(CO)	not available	not available	not available
HNCACB	not available	not available	not available
CBCACONNH	not available	not available	not available
13C/15N edited NOESY	not available	not available	not available
HCCH-TOCSY	not available	not available	not available

Software:

Felix v2000 - process

NMR spectrometers:

Varian INOVA 600 MHz

BMRB	5270
PDB	1NMN 1NU0 1OVQ
DBJ	BAB37248 BAE77012 BAG78741 BAI27233 BAI32263
EMBL	CAP77386 CAQ33259 CAQ90381 CAQ99897 CAR04466
GB	AAA69116 AAC75986 AAG58080 AAN44421 AAN81983
REF	NP_289521 NP_311852 NP_417424 NP_708714 NP_755410
SP	A1AFD5 A7ZR72 A8A489 B1IT58 B1LDF8
AlphaFold	A1AFD5 A7ZR72 A8A489 B1IT58 B1LDF8