BMRB Entry 4852

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR4852

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Title:
1H and 15N chemical shift assignments for Herpersvirus-8 MIP-II
Deposition date:
2000-10-08
Original release date:
2000-10-23
Authors:
Shao, Weiping; Fernandez, E.; Wilken, J.; Thompson, D.; Siani, M; West, J.; Lolis, E.; Schweitzer, B
Citation:

Citation: Shao, Weiping; Fernandez, E.; Wilken, J.; Thompson, D.; Siani, M; West, J.; Lolis, E.; Schweitzer, B. "Accessibility of selenomethionine proteins by total synthesis: structural studies of human herpesvirus-8 MIP-II"  FEBS Lett. 441, 77-82 (1998).

Assembly members:

Assembly members:
herpesvirus-8 macrophage inflammatory protein-II, polymer, 74 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: Human herpesvirus 8   Taxonomy ID: 37296   Superkingdom: not available   Kingdom: not available   Genus/species: not available Kaposi's sarcoma-associated herpesvirus

Experimental source:

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
herpesvirus-8 macrophage inflammatory protein-II: GDTLGASWHRPDKCCLGYQK RPLPQVLLSSWYPTSQLCSK PGVIFLTKRGRQVCADKSKD WVKKLMQQLPVTAR

Data sets:
Data typeCount
1H chemical shifts546
15N chemical shifts73

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1vMIP-II monomer1

Entities:

Entity 1, vMIP-II monomer 74 residues - Formula weight is not available

1   GLYASPTHRLEUGLYALASERTRPHISARG
2   PROASPLYSCYSCYSLEUGLYTYRGLNLYS
3   ARGPROLEUPROGLNVALLEULEUSERSER
4   TRPTYRPROTHRSERGLNLEUCYSSERLYS
5   PROGLYVALILEPHELEUTHRLYSARGGLY
6   ARGGLNVALCYSALAASPLYSSERLYSASP
7   TRPVALLYSLYSLEUMETGLNGLNLEUPRO
8   VALTHRALAARG

Samples:

Sample_1: herpesvirus-8 macrophage inflammatory protein-II 2 mM; sodium phosphate 50 mM; sodium azide 0.1 mM

Sample_2: herpesvirus-8 macrophage inflammatory protein-II 2 mM; sodium phosphate 50 mM; sodium azide 0.1 mM

Ex-cond_1: pH: 3.25; temperature: 308 K; ionic strength: 0.10 M

Experiments:

NameSampleSample stateSample conditions
1H-15N HSQCnot availablenot availablenot available
DQF-COSYnot availablenot availablenot available
TOCSYnot availablenot availablenot available
NOESYnot availablenot availablenot available
ROESYnot availablenot availablenot available

Software:

Felix - data processing, assignment

NMR spectrometers:

  • Varian Unity plus 600 MHz

Related Database Links:

BMRB 4914
PDB
GB AAB61702 AAB62642 AAC34941 AAC57093 ABD28861
REF YP_001129362
SP Q98157
AlphaFold Q98157

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks