BMRB Entry 4650

Click here to enlarge.

PDB ID: 1g04
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR4650
MolProbity Validation Chart

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title:

Sheep prion protein synthetic peptide spanning helix 1 and b strand 2 (residues 142 to 166) shows b hairpin structure in solution

Deposition date:

2000-10-05

Original release date:

2002-06-26

Authors:

Kozin, S.; Bertho, G.; Mazur, A.; Rabesona, H.; Girault, J.-P.; Haertle, T.; Takahashi, M.; Debey, P.; Hui Bon Hoa, G.

Citation:

Citation: Kozin, S.; Bertho, G.; Mazur, A.; Rabesona, H.; Girault, J.-P.; Haertle, T.; Takahashi, M.; Debey, P.; Hui Bon Hoa, G.. "Structural Duality of a Peptide from Sheep Prion Protein may be One of the Causes of Prion Conversion" J. Biol. Chem. 276, 46364-46370 (2001).
PubMed: 11577109

Assembly members:

Assembly members:
Major Prion Protein, polymer, 26 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Sheep Taxonomy ID: 9940 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Ovis aries

Experimental source:

Experimental source: Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Major Prion Protein: GNDYEDRYYRENMYRYPNQV YYRPVC

Data sets:

assigned_chemical_shifts
- chemical_shift_set_1
coupling_constants
- coupling_constant_set_1

Data type	Count
1H chemical shifts	201
coupling constants	19

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	SHEEP PRION PEPTIDE	1

Entities:

Entity 1, SHEEP PRION PEPTIDE 26 residues - Formula weight is not available

1

GLY

ASN

ASP

TYR

GLU

ASP

ARG

TYR

ARG

2

GLU

ASN

MET

TYR

ARG

TYR

PRO

ASN

GLN

VAL

3

TYR

ARG

PRO

VAL

CYS

Samples:

sample_1: Major Prion Protein 4.5 mM; sodium phosphate 10 mM; H2O 90%; D2O 10%

sample_cond_1: ionic strength: 15 mM; pH: 6.5; pressure: 1 atm; temperature: 278 K

Experiments:

Name	Sample	Sample state	Sample conditions
1D, 2D DQF-COSY	sample_1	not available	sample_cond_1
2D NOESY	sample_1	not available	sample_cond_1
2D ROESY	sample_1	not available	sample_cond_1
2D TOCSY	sample_1	not available	sample_cond_1
PFG HSQC	sample_1	not available	sample_cond_1
PFG HMBC	sample_1	not available	sample_cond_1
2D 1H-13C HSQC	sample_1	not available	sample_cond_1
2D 1H-13C HMBC	sample_1	not available	sample_cond_1

Software:

xwinnmr v2.1 - collection

NMR spectrometers:

Bruker AMX 500 MHz

BMRB	15394 15399 16328 16616 25250 25251
PDB	1G04 1M25 1TPX 1TQB 1TQC 1XYJ 1XYU 1XYW 1Y2S 2FJ3 2JOH 2JOM 3O79 4HLS 4HMM 4HMR 4YXH 4YXK
DBJ	BAA07376 BAB69955 BAB69956 BAD51981 BAE91721
EMBL	CAA04234 CAA04235 CAA04236 CAA04272 CAA04273
GB	AAA68634 AAA68635 AAA68941 AAB03105 AAB50623
PRF	1921132A
REF	NP_001009481 NP_001040617 NP_001075490 NP_001124544 NP_001137270
SP	O18754 P23907 P40245 P40246 P40247
TPE	CAJ43808 CAL59564
AlphaFold	O18754 P23907 P40245 P40246 P40247