BMRB Entry 4019

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR4019

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

1H, 13C and 15N Resonance Assignments of Recombinant Poplar Plastocyanin

Deposition date:

1996-08-19

Original release date:

1999-04-14

Authors:

Koide, Shohei; Gippert, Garry; Reymond, Martine; Wright, Peter

Citation:

Citation: Koide, Shohei; Gippert, Garry; Reymond, Martine; Wright, Peter. "1H, 13C and 15N Resonance Assignments of Recombinant Poplar Plastocyanin" The BMRB entry is the only known published source for the data..

Assembly members:

Assembly members:
plastocyanin peptide, polymer, 99 residues, Formula weight is not available
CU1, non-polymer, 63.546 Da.

Natural source:

Natural source: Common Name: poplar Taxonomy ID: 3697 Superkingdom: Eukaryota Kingdom: Viridiplantae Genus/species: Populus populus sp.

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli

Entity Sequences (FASTA):

Entity Sequences (FASTA):
plastocyanin peptide: IDVLLGADDGSLAFVPSEFS ISPGEKIVFKNNAGFPHNIV FDEDSIPSGVDASKISMSEE DLLNAKGETFEVALSNKGEY SFYCSPHQGAGMVGKVTVN

Data sets:

assigned_chemical_shifts
- chemical_shift_assignment_data_set_one
- chemical_shift_assignment_data_set_two

Data type	Count
13C chemical shifts	425
15N chemical shifts	101
1H chemical shifts	668

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Pc peptide	1
2	CuI	2

Entities:

Entity 1, Pc peptide 99 residues - Formula weight is not available

1

ILE

ASP

VAL

LEU

GLY

ALA

ASP

GLY

2

SER

LEU

ALA

PHE

VAL

PRO

SER

GLU

PHE

SER

3

ILE

SER

PRO

GLY

GLU

LYS

ILE

VAL

PHE

LYS

4

ASN

ALA

GLY

PHE

PRO

HIS

ASN

ILE

VAL

5

PHE

ASP

GLU

ASP

SER

ILE

PRO

SER

GLY

VAL

6

ASP

ALA

SER

LYS

ILE

SER

MET

SER

GLU

7

ASP

LEU

ASN

ALA

LYS

GLY

GLU

THR

PHE

8

GLU

VAL

ALA

LEU

SER

ASN

LYS

GLY

GLU

TYR

9

SER

PHE

TYR

CYS

SER

PRO

HIS

GLN

GLY

ALA

10

GLY

MET

VAL

GLY

LYS

VAL

THR

VAL

ASN

Entity 2, CuI - Cu - 63.546 Da.

1

CU1

Samples:

sample_one: plastocyanin, none,

sample_two: plastocyanin, [15N-U],

sample_three: plastocyanin, [13C-U; 15N-U],

reporting_conditions_set_one: pH: 7 na; temperature: 303 K

Experiments:

Name	Sample	Sample state	Sample conditions
not available	not available	not available	reporting_conditions_set_one

Software:

FELIX, MSI/BIOSYM, San Diego - Peak picking, Peak volume integration

GENMAC, . - Generate FELIX macros for NH strip manipulation

GENXPK, . - Assign new peaks, Automatically generate complete sets of crosspeak footprints, Compare homologous chemical shifts from different protein species, Monitor the relocation of footprints to new positions

BMRB	19247
PDB	1JXG 1PLC 1PNC 1PND 1TKW 2PCY 3PCY 4DP7 4DP8 4DP9 4DPA 4DPB 4DPC 4PCY 5PCY 6PCY
EMBL	CAA90564
GB	ABK96770 EEE94750
REF	XP_002307754 XP_011003094
SP	P00299
AlphaFold	P00299