BMRB Entry 36680

Title:
Solution structure of MAX1A G-quadruplex DNA
Deposition date:
2024-07-05
Original release date:
2026-06-08
Authors:
Hu, X.; Cao, C.
Citation:

Citation: Hu, X.; Cao, C.. "Solution structure of MAX G-quadruplex DNA"  .

Assembly members:

Assembly members:
DNA (5'-D(*AP*GP*GP*GP*AP*GP*GP*GP*GP*AP*AP*GP*GP*GP*GP*TP*GP*AP*AP*GP*GP*GP*GP*A)-3'), polymer, 24 residues, 7718.978 Da.

Natural source:

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:

Experimental source:   Production method: chemical synthesis   Host organism: unidentified

Entity Sequences (FASTA):

Entity Sequences (FASTA):
DNA (5'-D(*AP*GP*GP*GP*AP*GP*GP*GP*GP*AP*AP*GP*GP*GP*GP*TP*GP*AP*AP*GP*GP*GP*GP*A)-3'): AGGGAGGGGAAGGGGTGAAG GGGA

Data sets:
Data typeCount
1H chemical shifts230

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1entity_11

Entities:

Entity 1, entity_1 24 residues - 7718.978 Da.

1   DADGDGDGDADGDGDGDGDA
2   DADGDGDGDGDTDGDADADG
3   DGDGDGDA

Samples:

sample_1: MAX1A 1.0 mM; H2O 90%; D2O, [U-2H], 10%

sample_2: MAX1A 1.0 mM; D2O, [U-2H], 100%

sample_3: MAX1A 1.0 mM; H2O 90%; D2O, [U-2H], 10%

sample_conditions_1: ionic strength: 100 mM; pH: 7; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D DQF-COSYsample_1isotropicsample_conditions_1
2D 1H-1H TOCSYsample_1isotropicsample_conditions_1
2D 1H-1H NOESYsample_1isotropicsample_conditions_1
2D DQF-COSYsample_2isotropicsample_conditions_1
2D 1H-1H TOCSYsample_2isotropicsample_conditions_1
2D 1H-1H NOESYsample_2isotropicsample_conditions_1
2D 1H-13C HSQCsample_3isotropicsample_conditions_1

Software:

VnmrJ, Varian - collection

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

Sparky, Goddard - peak picking

X-PLOR NIH, Schwieters, Kuszewski, Tjandra and Clore - structure calculation

X-PLOR NIH, Schwieters, Kuszewski, Tjandra and Clore - refinement

NMR spectrometers:

  • Agilent Premium 800 MHz
  • Bruker AVANCE 600 MHz