BMRB Entry 19333

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PDB ID: 2ma9
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, SPARTA
BMRB Entry DOI: doi:10.13018/BMR19333
MolProbity Validation Chart

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Title:
HIV-1 Vif SOCS-box and Elongin BC solution structure
Deposition date:
2013-07-01
Original release date:
2013-12-09
Authors:
LU, Zhisheng; Bergeron, Julien; Atkinson, Andrew; Schaller, Torsten; Veselkov, Dennis; Oregioni, Alain; Yang, Yi; Matthews, Stephen; Malim, Michael; Sanderson, Mark
Citation:

Citation: Lu, Zhisheng; Bergeron, Julien; Atkinson, Andrew; Schaller, Torsten; Veselkov, Dennis; Oregioni, Alain; Yang, Yi; Matthews, Stephen; Malim, Michael; Sanderson, Mark. "Insight into the HIV-1 Vif SOCS-box ElonginBC interaction"  Open Biol. 3, 130100-130100 (2013).
PubMed: 24225024

Assembly members:

Assembly members:
Vif_SOCS, polymer, 36 residues, 3637.402 Da.
Elongin_B, polymer, 118 residues, 13147.898 Da.
Elongin_C, polymer, 91 residues, 10217.753 Da.

Natural source:

Natural source:   Common Name: HIV-1   Taxonomy ID: 11676   Superkingdom: Viruses   Kingdom: not available   Genus/species: Lentivirus Human immunodeficiency virus 1

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pET30

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Vif_SOCS: HNKVGSLQYLALAALIKPKQ IKPPLPSVRKLTEDRW
Elongin_B: MDVFLMIRRHKTTIFTDAKE SSTVFELKRIVEGILKRPPD EQRLYKDDQLLDDGKTLGEC GFTSQTARPQAPATVGLAFR ADDTFEALCIEPFSSPPELP DVMKPQDSGSSANEQAVQ
Elongin_C: VKLISSDGHEFIVKREHALT SGTIKAMLSGPGQFAENETN EVNFREIPSHVLSKVCMYFT YKVRYTNSSTEIPEFPIAPE IALELLMAANF

Data typeCount
13C chemical shifts417
15N chemical shifts160
1H chemical shifts250

Additional metadata:

  • Assembly
  • Samples and Experiments
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Assembly:

Entity Assembly IDEntity NameEntity ID
1entity_11
2entity_22
3entity_33

Entities:

Entity 1, entity_1 36 residues - 3637.402 Da.

1   HISASNLYSVALGLYSERLEUGLNTYRLEU
2   ALALEUALAALALEUILELYSPROLYSGLN
3   ILELYSPROPROLEUPROSERVALARGLYS
4   LEUTHRGLUASPARGTRP

Entity 2, entity_2 118 residues - 13147.898 Da.

1   METASPVALPHELEUMETILEARGARGHIS
2   LYSTHRTHRILEPHETHRASPALALYSGLU
3   SERSERTHRVALPHEGLULEULYSARGILE
4   VALGLUGLYILELEULYSARGPROPROASP
5   GLUGLNARGLEUTYRLYSASPASPGLNLEU
6   LEUASPASPGLYLYSTHRLEUGLYGLUCYS
7   GLYPHETHRSERGLNTHRALAARGPROGLN
8   ALAPROALATHRVALGLYLEUALAPHEARG
9   ALAASPASPTHRPHEGLUALALEUCYSILE
10   GLUPROPHESERSERPROPROGLULEUPRO
11   ASPVALMETLYSPROGLNASPSERGLYSER
12   SERALAASNGLUGLNALAVALGLN

Entity 3, entity_3 91 residues - 10217.753 Da.

1   VALLYSLEUILESERSERASPGLYHISGLU
2   PHEILEVALLYSARGGLUHISALALEUTHR
3   SERGLYTHRILELYSALAMETLEUSERGLY
4   PROGLYGLNPHEALAGLUASNGLUTHRASN
5   GLUVALASNPHEARGGLUILEPROSERHIS
6   VALLEUSERLYSVALCYSMETTYRPHETHR
7   TYRLYSVALARGTYRTHRASNSERSERTHR
8   GLUILEPROGLUPHEPROILEALAPROGLU
9   ILEALALEUGLULEULEUMETALAALAASN
10   PHE

Related Database Links:

PDB 2MA9 3DCG 4N9F 1LM8 1LQB 1VCB 2C9W 2FNJ 2IZV 2JZ3 3ZKJ 3ZNG 3ZRC 3ZRF 3ZTC 3ZTD 3ZUN 4AJY 4AWJ 4B95 4B9K 4BKS 4BKT 4JGH 4W9C 4W9D 4W9E 4W9F 4W9G 4W9H 4W9I 4W9J 4W9K 4W9L
GB AAA44989 AAB04038 AAB31804 AAB60573 AAC28447 AAA75522 AAA80968 AAC08452 AAH13306 AAH51927 AAA41109 AAA67650 AAH09104 AAH13809 AAH28545
SP P12504 P62869 P62870 Q15370 P83940 P83941 Q15369 Q2KII4
BMRB 15606 15606
DBJ BAB21946 BAB22417 BAB22684 BAB25690 BAB25727 BAB27825 BAB27939 BAB28546 BAB28641 BAC30437
PRF 2119399A 2119399B
REF NP_001029972 NP_009039 NP_080581 NP_112391 NP_996896 NP_001002440 NP_001004673 NP_001007889 NP_001016420 NP_001039958
TPG DAA15620 DAA22672
EMBL CAG32006 CAJ81641 CBN81906 CDQ94726 CDQ97243
AlphaFold P12504 P62869 P62870 Q15370 P83940 P83941 Q15369 Q2KII4

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks