BMRB Entry 18121

Name: 1H, 13C, and 15N chemical shift assignments for CdnLNt from Myxoccoccus xanthus
Published: 2012-03-09

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PDB ID: 2lt4
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR18121
MolProbity Validation Chart

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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

1H, 13C, and 15N chemical shift assignments for CdnLNt from Myxoccoccus xanthus

Deposition date:

2011-12-07

Original release date:

2012-03-09

Authors:

Jimenez, M. Angeles; Padmanabhan, S.

Citation:

Citation: Mirassou, Yasmina; Elias-Arnanz, Montserrat; Padmanabhan, S.; Jimenez, M. Angeles. "(1)H, (13)C and (15)N assignments of CdnL, an essential protein in Myxococcus xanthus." Biomol. NMR Assignments 7, 51-55 (2013).
PubMed: 22392343

Assembly members:

Assembly members:
CdnL_N-terminal_domain, polymer, 71 residues, 7776.9 Da.

Natural source:

Natural source: Common Name: Myxoccoccus xanthus Taxonomy ID: 34 Superkingdom: Bacteria Kingdom: not available Genus/species: Myxoccoccus xanthus

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pTYB12

Entity Sequences (FASTA):

Entity Sequences (FASTA):
CdnL_N-terminal_domain: AGHMQTSFKTGDKAVYPGQG VGEVMGIEHTEVAGQRQSFY VLRILENGMRIMIPINKVGS VGLREIISEED

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1
- assigned_chem_shift_list_2

Data type	Count
13C chemical shifts	431
15N chemical shifts	138
1H chemical shifts	628

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	CdnLNt	1

Entities:

Entity 1, CdnLNt 71 residues - 7776.9 Da.

AGH is the N-terminal cloning tag

1

ALA

GLY

HIS

MET

GLN

THR

SER

PHE

LYS

THR

2

GLY

ASP

LYS

ALA

VAL

TYR

PRO

GLY

GLN

GLY

3

VAL

GLY

GLU

VAL

MET

GLY

ILE

GLU

HIS

THR

4

GLU

VAL

ALA

GLY

GLN

ARG

GLN

SER

PHE

TYR

5

VAL

LEU

ARG

ILE

LEU

GLU

ASN

GLY

MET

ARG

6

ILE

MET

ILE

PRO

ILE

ASN

LYS

VAL

GLY

SER

7

VAL

GLY

LEU

ARG

GLU

ILE

SER

GLU

8

ASP

Samples:

sample_1: CdnL N-terminal domain 1 mM; sodium phosphate 50 mM; sodium chloride 100 mM; sodium azide 0.05%; DSS 0.5 mM

sample_2: CdnL N-terminal domain 1 mM; sodium phosphate 50 mM; sodium chloride 100 mM; sodium azide 0.05%; DSS 0.5 mM

sample_3: CdnL N-terminal domain, [U-100% 13C; U-100% 15N], 1 mM; sodium phosphate 50 mM; sodium chloride 100 mM; sodium azide 0.05%; DSS 0.5 mM

sample_4: CdnL N-terminal domain, [U-100% 13C; U-100% 15N], 1 mM; sodium phosphate 50 mM; sodium chloride 100 mM; sodium azide 0.05%; DSS 0.5 mM

sample_5: CdnL N-terminal domain, [U-100% 13C; U-100% 15N], 0.5 mM; sodium phosphate 50 mM; sodium chloride 100 mM; sodium azide 0.05%; DSS 0.25 mM

sample_conditions_1: ionic strength: 0.15 M; pH: 7.0; pressure: 1 atm; temperature: 298 K

sample_conditions_2: ionic strength: 0.15 M; pH: 7.0; pressure: 1 atm; temperature: 288 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-1H COSY	sample_1	isotropic	sample_conditions_1
2D 1H-1H TOCSY	sample_1	isotropic	sample_conditions_1
2D 1H-1H NOESY	sample_1	isotropic	sample_conditions_1
2D 1H-1H COSY	sample_2	isotropic	sample_conditions_1
2D 1H-1H TOCSY	sample_2	isotropic	sample_conditions_1
2D 1H-1H NOESY	sample_2	isotropic	sample_conditions_1
2D 1H-15N HSQC	sample_3	isotropic	sample_conditions_1
3D HNCO	sample_3	isotropic	sample_conditions_1
3D HNCA	sample_3	isotropic	sample_conditions_1
3D HNCACB	sample_3	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_3	isotropic	sample_conditions_1
3D HBHA(CO)NH	sample_3	isotropic	sample_conditions_1
2D 1H-13C HSQC aliphatic	sample_4	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_4	isotropic	sample_conditions_1
3D 1H-13C NOESY aliphatic	sample_4	isotropic	sample_conditions_1
2D 1H-15N HSQC	sample_5	isotropic	sample_conditions_1
3D HNCA	sample_5	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_5	isotropic	sample_conditions_1
3D HBHA(CO)NH	sample_5	isotropic	sample_conditions_1
2D 1H-15N HSQC	sample_3	isotropic	sample_conditions_2
3D HNCO	sample_3	isotropic	sample_conditions_2
3D HNCA	sample_3	isotropic	sample_conditions_2
3D HNCACB	sample_3	isotropic	sample_conditions_2
3D CBCA(CO)NH	sample_3	isotropic	sample_conditions_2
3D HBHA(CO)NH	sample_3	isotropic	sample_conditions_2
2D 1H-13C HSQC aromatic	sample_2	isotropic	sample_conditions_1

Software:

TOPSPIN, Bruker Biospin - collection, processing

SPARKY, Goddard - chemical shift assignment, peak picking

NMR spectrometers:

Bruker Avance 800 MHz
Bruker Avance 600 MHz

BMRB	18151
PDB	2LT4 2LWJ
GB	ABF89955 ADO71151 AEI66063 AFE08291 AGC44335
REF	WP_002617724 WP_002625147 WP_002639129 WP_011552697 WP_013939202