BMRB Entry 15129

Name: Solution structure of the first SH3 domain of human Vinexin and its interaction with the peptides from Vinculin
Published: 2007-05-21

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR15129

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title:

Solution structure of the first SH3 domain of human Vinexin and its interaction with the peptides from Vinculin

Deposition date:

2007-02-02

Original release date:

2007-05-21

Authors:

Zhang, J.; Yao, B.; Wu, J.; Shi, Y.

Citation:

Citation: Zhang, J.; Yao, B.; Wu, J.; Shi, Y.. "Solution structure of the first SH3 domain of human Vinexin and its interaction with the vinculin peptides" Biochem. Biophys. Res. Commun. 357, 931-937 (2007).
PubMed: 17467669

Assembly members:

Assembly members:
Vinexin, polymer, 65 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: PET22b(+)

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Vinexin: MKAARLKFDFQAQSPKELTL QKGDIVYIHKEVDKNWLEGE HHGRLGIFPANYVEVLPLEH HHHHH

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	242
15N chemical shifts	58
1H chemical shifts	410

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	SH3	1

Entities:

Entity 1, SH3 65 residues - Formula weight is not available

1

MET

LYS

ALA

ARG

LEU

LYS

PHE

ASP

PHE

2

GLN

ALA

GLN

SER

PRO

LYS

GLU

LEU

THR

LEU

3

GLN

LYS

GLY

ASP

ILE

VAL

TYR

ILE

HIS

LYS

4

GLU

VAL

ASP

LYS

ASN

TRP

LEU

GLU

GLY

GLU

5

HIS

GLY

ARG

LEU

GLY

ILE

PHE

PRO

ALA

6

ASN

TYR

VAL

GLU

VAL

LEU

PRO

LEU

GLU

HIS

7

HIS

Samples:

sample_1: Vinexin, [U-100% 13C; U-100% 15N], 1.2 mM; phosphate buffer 50 mM; NaCl 50 mM; DTT 1 mM; EDTA 1 mM

sample_conditions_1: pH: 6.2; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D_15N-separated_NOESY	sample_1	isotropic	sample_conditions_1
3D_13C-separated_NOESY	sample_1	isotropic	sample_conditions_1

Software:

NMRPipe v2.2, Delaglio, F. - processing

SPARKY v3, Goddard, T.D., Kneller, D.G. - data analysis

CNSSOLVE v1.1, Brunger, Adams, Clore, Gros, Nilges and Read - structure solution

Molmol v2K.2, Koradi - data analysis

NMR spectrometers:

Bruker AVANCE 600 MHz

BMRB	11242
PDB	2DLM 2NWM
REF	XP_004332006