BMRB Entry 11242

Name: Solution structure of the first SH3 domain of human vinexin
Published: 2011-08-03

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PDB ID: 2dlm
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11242
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Nicholas Rego and David Koes
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the first SH3 domain of human vinexin

Deposition date:

2010-07-23

Original release date:

2011-08-03

Authors:

Zhang, H.; Izumi, K.; Yoshida, M.; Hayashi, F.; Yokoyama, S.

Citation:

Citation: Zhang, H.; Izumi, K.; Yoshida, M.; Hayashi, F.; Yokoyama, S.. "Solution structure of the first SH3 domain of human vinexin" .

Assembly members:

Assembly members:
SH3 domain, residues 8-62, polymer, 68 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: P050516-12

Entity Sequences (FASTA):

Entity Sequences (FASTA):
SH3 domain, residues 8-62: GSSGSSGKAARLKFDFQAQS PKELTLQKGDIVYIHKEVDK NWLEGEHHGRLGIFPANYVE VLSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	277
15N chemical shifts	61
1H chemical shifts	435

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Vinexin	1

Entities:

Entity 1, Vinexin 68 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

LYS

ALA

2

ARG

LEU

LYS

PHE

ASP

PHE

GLN

ALA

GLN

SER

3

PRO

LYS

GLU

LEU

THR

LEU

GLN

LYS

GLY

ASP

4

ILE

VAL

TYR

ILE

HIS

LYS

GLU

VAL

ASP

LYS

5

ASN

TRP

LEU

GLU

GLY

GLU

HIS

GLY

ARG

6

LEU

GLY

ILE

PHE

PRO

ALA

ASN

TYR

VAL

GLU

7

VAL

LEU

SER

GLY

PRO

SER

GLY

Samples:

sample_1: SH3 domain, residues 8-62, [U-13C; U-15N], 0.89 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	sample_1	isotropic	condition_1
3D 13C-separated NOESY	sample_1	isotropic	condition_1

Software:

Delta v4.3.2, JEOL - collection

NMRPipe v20031121, Delaglio, F. - processing

NMRView v5.04, Johnson, B.A. - data analysis

Kujira v0.93191, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntent, P. - refinement, structure solution

NMR spectrometers:

JEOL ECA 700 MHz

BMRB	15129
PDB	2DLM 2NWM
REF	XP_004332006