BMRB Entry 15108

Name: NMR structure of p1 from the infectious bursal disease virus (IBDV) in dodecylphosphocholin (DPC).
Published: 2007-10-17

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PDB ID: 2imu
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR15108
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

NMR structure of p1 from the infectious bursal disease virus (IBDV) in dodecylphosphocholin (DPC).

Deposition date:

2007-01-23

Original release date:

2007-10-17

Authors:

Galloux, M.; Libersou, S.; Morellet, N.; Bouaziz, S.; Ouldali, M.; Da Costa, B.; Lepault, J.; Delmas, B.

Citation:

Citation: Galloux, M.; Libersou, S.; Morellet, N.; Bouaziz, S.; Da Costa, B.; Ouldali, M.; Lepault, J.; Delmas, B.. "Infectious bursal disease virus, a non-enveloped virus, possesses a capsid-associated peptide that deforms and perforates biological membranes" J. Biol. Chem. 282, 20774-20784 (2007).
PubMed: 17488723

Assembly members:

Assembly members:
IBDV_p1_peptide, polymer, 46 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Gumboro virus Taxonomy ID: 10995 Superkingdom: Viruses Kingdom: not available Genus/species: Avibirnavirus Gumboro virus

Experimental source:

Experimental source: Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
IBDV_p1_peptide: FGFKDIIRAIRRIAVPVVST LFPPAAPLAHAIGEGVDYLL GDEAQA

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
1H chemical shifts	318

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	p1	1

Entities:

Entity 1, p1 46 residues - Formula weight is not available

1

PHE

GLY

PHE

LYS

ASP

ILE

ARG

ALA

ILE

2

ARG

ILE

ALA

VAL

PRO

VAL

SER

THR

3

LEU

PHE

PRO

ALA

PRO

LEU

ALA

HIS

4

ALA

ILE

GLY

GLU

GLY

VAL

ASP

TYR

LEU

5

GLY

ASP

GLU

ALA

GLN

ALA

Samples:

sample: pep46 1 mM; DPC 40 mM

sample_conditions_1: ionic strength: 0 mM; pH: 3.5; pressure: 1 atm; temperature: 333 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D NOESY	sample	isotropic	sample_conditions_1
2D TOCSY	sample	isotropic	sample_conditions_1

Software:

xwinnmr v3.0, Bruker Biospin - collection

X-PLOR v3.851, Brunger - structure solution

NMR spectrometers:

Bruker AVANCE 600 MHz

BMRB	16489
PDB	2IMU
DBJ	BAA00391 BAA00740 BAA00741 BAA00745 BAA00954
EMBL	CAA27629 CAA34234 CAA58851 CAA63416 CAA79983
GB	AAA46238 AAA52086 AAB63594 AAC06016 AAC06017
REF	NP_690838
SP	P08364 P15480 P22351 P25219 P25220
AlphaFold	P08364 P15480 P22351 P25219 P25220