BMRB Entry 6754

Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6754

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Backbone and sidechain 1H, 13C, and 15N Chemical Shift Assignments for the PDZ domain of alpha syntrophin

Deposition date:

2005-07-27

Original release date:

2007-01-29

Authors:

Yan, Jing; Wen, Wenyu; Xu, Weiguang; Long, Jia-fu; Adams, Marvin; Froehner, Stanley; Zhang, Mingjie

Citation:

Citation: Yan, Jing; Wen, Wenyu; Xu, Weiguang; Long, Jia-fu; Adams, Marvin; Froehner, Stanley; Zhang, Mingjie. "Structure of the split PH domain and distinct lipid-binding properties of the PH-PDZ supramodule of alpha-syntrophin." EMBO J. 24, 3985-3995 (2005).
PubMed: 16252003

Assembly members:

Assembly members:
PDZ domain, polymer, 87 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
PDZ domain: RRRVTVRKADAGGLGISIKG GRENKMPILISKIFKGLAAD QTEALFVGDAILSVNGEDLS SATHDEAVQALKKTGKEVVL EVKYMKE

Data sets:

assigned_chemical_shifts
- chem_shift_list_1

Data type	Count
13C chemical shifts	266
15N chemical shifts	84
1H chemical shifts	582

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	PDZ domain	1

Entities:

Entity 1, PDZ domain 87 residues - Formula weight is not available

1

ARG

VAL

THR

VAL

ARG

LYS

ALA

ASP

2

ALA

GLY

LEU

GLY

ILE

SER

ILE

LYS

GLY

3

GLY

ARG

GLU

ASN

LYS

MET

PRO

ILE

LEU

ILE

4

SER

LYS

ILE

PHE

LYS

GLY

LEU

ALA

ASP

5

GLN

THR

GLU

ALA

LEU

PHE

VAL

GLY

ASP

ALA

6

ILE

LEU

SER

VAL

ASN

GLY

GLU

ASP

LEU

SER

7

SER

ALA

THR

HIS

ASP

GLU

ALA

VAL

GLN

ALA

8

LEU

LYS

THR

GLY

LYS

GLU

VAL

LEU

9

GLU

VAL

LYS

TYR

MET

LYS

GLU

Samples:

sample_1: PDZ domain, [U-13C; U-15N], 1 mM

sample_2: PDZ domain, [U-15N], 1 mM

conditions_1: pH: 7; temperature: 303 K

Experiments:

Name	Sample	Sample state	Sample conditions
HNCO	not available	not available	not available
HNCA	not available	not available	not available
HN(CO)CA	not available	not available	not available
HNCACB	not available	not available	not available
CBCA(CO)NH	not available	not available	not available
HCCH-TOCSY	not available	not available	not available
3D 15N-separated NOESY	not available	not available	not available
3D 15C-separated NOESY	not available	not available	not available

Software:

No software information available

NMR spectrometers:

Varian Inova 750 MHz

BMRB	6752
PDB	1QAV 1Z86 1Z87 2PDZ 4HOP
DBJ	BAE23334 BAF84683 BAG63252 BAJ20452
GB	AAA68937 AAB36398 AAC50448 AAC52119 AAH18546
PRF	2208351A 2208451B
REF	NP_001069366 NP_001075802 NP_001094371 NP_001253168 NP_003089
SP	Q0P5E6 Q13424 Q28626 Q61234
TPG	DAA23263
AlphaFold	Q61234 Q0P5E6 Q13424 Q28626