BMRB Entry 18317

Title:
Chemical shift assignments of the canecystatin-1 from Saccharum officinarum
Deposition date:
2012-03-07
Original release date:
2012-06-18
Authors:
Cavini, Italo; Silva, Rodrigo; Marques, Ivo; Kalbitzer, Hans; Munte, Claudia
Citation:

Citation: Cavini, Italo Augusto; de Oliveira-Silva, Rodrigo; de Almeida Marques, Ivo; Kalbitzer, Hans Robert; Munte, Claudia Elisabeth. "Chemical shift assignments of the canecystatin-1 from Saccharum officinarum."  Biomol. NMR Assignments 7, 163-165 (2013).
PubMed: 22696137

Assembly members:

Assembly members:
sugarcane_cystatin, polymer, 106 residues, 11900 Da.

Natural source:

Natural source:   Common Name: Sugarcane   Taxonomy ID: 4547   Superkingdom: Eukaryota   Kingdom: Viridiplantae   Genus/species: Saccharum officinarum

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pET28a

Entity Sequences (FASTA):

Data sets:
Data typeCount
13C chemical shifts419
15N chemical shifts116
1H chemical shifts702

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1sugarcane cystatin1

Entities:

Entity 1, sugarcane cystatin 106 residues - 11900 Da.

1   METALAGLUALAASPASNGLYARGARGVAL
2   GLYMETVALGLYASPVALARGASPALAPRO
3   ALAGLYHISGLUASNASPLEUGLUALAILE
4   GLULEUALAARGPHEALAVALALAGLUHIS
5   ASNSERLYSTHRASNALAMETLEUGLUPHE
6   GLUARGLEUVALLYSVALARGHISGLNVAL
7   VALALAGLYTHRMETHISHISPHETHRVAL
8   GLNVALLYSGLUALAGLYGLYGLYLYSLYS
9   LEUTYRGLUALALYSVALTRPGLULYSVAL
10   TRPGLUASNPHELYSGLNLEUGLNSERPHE
11   GLNPROVALGLYASPALA

Samples:

sample_1: sugarcane cystatin, [U-15N], 1 mM; D2O 5%; sodium chloride 100 mM; potassium phosphate 50 mM; sodium azide 1 mM; DSS 100 uM

sample_2: sugarcane cystatin, [U-13C; U-15N], 1 mM; D2O 99.95%; sodium chloride 100 mM; DSS 100 uM; sodium azide 1 mM; potassium phosphate 50 mM

sample_3: sugarcane cystatin 1 mM; D2O 5%; sodium azide 1 mM; potassium phosphate 50 mM; sodium chloride 100 mM; DSS 100 uM

sample_4: sugarcane cystatin, [U-15N], 0.4 mM; D2O 5%; sodium chloride 100 mM; potassium phosphate 50 mM; sodium azide 1 mM; DSS 100 uM

sample_conditions_1: pH: 7; pressure: 1 atm; temperature: 303 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-1H TOCSYsample_3isotropicsample_conditions_1
2D 1H-1H NOESYsample_3isotropicsample_conditions_1
3D HNCAsample_1isotropicsample_conditions_1
3D HNCOsample_1isotropicsample_conditions_1
2D 1H-15N HSQCsample_4isotropicsample_conditions_1
3D CBCA(CO)NHsample_1isotropicsample_conditions_1
2D 1H-13C HSQCsample_2isotropicsample_conditions_1
3D HCCH-TOCSYsample_2isotropicsample_conditions_1
2D 1H-1H TOCSYsample_3isotropicsample_conditions_1

Software:

AUREMOL v2.4.0, Bruker Biospin - chemical shift assignment, data analysis

TOPSPIN v3.0, Bruker Biospin - processing

NMR spectrometers:

  • Bruker Avance 600 MHz
  • Bruker Avance 800 MHz

Related Database Links:

GB AAM78598.1 AAM78598
BMRB 18839
PDB
DBJ BAO79365

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks