BMRB Entry 6953

Name: NMR solution of rabbit Prion Protein (91-228)
Published: 2007-10-15

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PDB ID: 2fj3
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6953
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

NMR solution of rabbit Prion Protein (91-228)

Deposition date:

2006-01-27

Original release date:

2007-10-15

Authors:

Li, J.; Lin, D.

Citation:

Citation: Li, J.; Mei, F.; Xiao, G.; Lin, D.. "1H, 13C and 15N resonance assignments of rabbit prion protein (91-228)" J. Biomol. NMR 38, 181-181 (2007).
PubMed: 17415669

Assembly members:

Assembly members:
Major prion protein, polymer, 138 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Rabbit Taxonomy ID: 9986 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Oryctolagus cuniculus

Experimental source:

Experimental source: Production method: recombiant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Major prion protein: QGGTHNQWGKPSKPKTSMKH VAGAAAAGAVVGGLGGYMLG SAMSRPLIHFGNDYEDRYYR ENMYRYPNQVYYRPVDQYSN QNSFVHDCVNITVKQHTVTT TTKGENFTETDIKIMERVVE QMCITQYQQESQAAYQRA

Data sets:

assigned_chemical_shifts
- chemical_shift_set_1

Data type	Count
13C chemical shifts	532
15N chemical shifts	156
1H chemical shifts	927

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Major prion protein	1

Entities:

Entity 1, Major prion protein 138 residues - Formula weight is not available

1

GLN

GLY

THR

HIS

ASN

GLN

TRP

GLY

LYS

2

PRO

SER

LYS

PRO

LYS

THR

SER

MET

LYS

HIS

3

VAL

ALA

GLY

ALA

GLY

ALA

VAL

4

VAL

GLY

LEU

GLY

TYR

MET

LEU

GLY

5

SER

ALA

MET

SER

ARG

PRO

LEU

ILE

HIS

PHE

6

GLY

ASN

ASP

TYR

GLU

ASP

ARG

TYR

ARG

7

GLU

ASN

MET

TYR

ARG

TYR

PRO

ASN

GLN

VAL

8

TYR

ARG

PRO

VAL

ASP

GLN

TYR

SER

ASN

9

GLN

ASN

SER

PHE

VAL

HIS

ASP

CYS

VAL

ASN

10

ILE

THR

VAL

LYS

GLN

HIS

THR

VAL

THR

11

THR

LYS

GLY

GLU

ASN

PHE

THR

GLU

THR

12

ASP

ILE

LYS

ILE

MET

GLU

ARG

VAL

GLU

13

GLN

MET

CYS

ILE

THR

GLN

TYR

GLN

GLU

14

SER

GLN

ALA

TYR

GLN

ARG

ALA

Samples:

sample_1: Major prion protein, [U-15N; U-13C], 1 mM; acetate buffer 20 mM; H2O 90%; D2O 10%

sample_cond_1: pH: 4.5; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
HNCA-J	sample_1	not available	sample_cond_1
3D 13C-separated NOESY	sample_1	not available	sample_cond_1
3D 15N-separated NOESY	sample_1	not available	sample_cond_1
HNHA	sample_1	not available	sample_cond_1

Software:

NMRPipe v2.1 - processing

ARIA v1.2 - refinement, structure solution

NMR spectrometers:

Varian INOVA 600 MHz

BMRB	15394 15399 16328 16616 7142
PDB	1TPX 1TQB 1TQC 2FJ3 2JOH 2JOM 3O79 4HLS 4HMM 4HMR
EMBL	CBK44083
GB	AAC48697 AAD01554 ABL75505 AEM44421 AEM44422
REF	NP_001075490 XP_008254357 XP_008254358
SP	Q95211
AlphaFold	Q95211