BMRB Entry 17638

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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR17638
MolProbity Validation Chart

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Title:
NMR Structure of the Complete Internal Fusion Loop from Ebolavirus GP2 at pH 5.5
Deposition date:
2011-05-12
Original release date:
2011-08-03
Authors:
Gregory, S.; Harada, E.; Liang, B.; Tamm, L.
Citation:

Citation: Gregory, Sonia; Harada, Erisa; Liang, Binyong; Delos, Sue; White, Judith; Tamm, Lukas. "Structure and function of the complete internal fusion loop from Ebolavirus glycoprotein 2."  Proc. Natl. Acad. Sci. U. S. A. ., .-. (2011).
PubMed: 21690393

Assembly members:

Assembly members:
Ebolavirus_Fusion_Loop_pH_5.5, polymer, 54 residues, 5947.741 Da.

Natural source:

Natural source:   Common Name: not available   Taxonomy ID: not available   Superkingdom: not available   Kingdom: not available   Genus/species: not available not available

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pET41

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Ebolavirus_Fusion_Loop_pH_5.5: AQPKCNPNLHYWTTQDEGAA IGLAWIPYFGPAAEGIYIEG LMHNQDGLICGLRQ

Data sets:
Data typeCount
13C chemical shifts137
15N chemical shifts48
1H chemical shifts338

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1Ebolavirus Fusion Loop pH 5.51

Entities:

Entity 1, Ebolavirus Fusion Loop pH 5.5 54 residues - 5947.741 Da.

1   ALAGLNPROLYSCYSASNPROASNLEUHIS
2   TYRTRPTHRTHRGLNASPGLUGLYALAALA
3   ILEGLYLEUALATRPILEPROTYRPHEGLY
4   PROALAALAGLUGLYILETYRILEGLUGLY
5   LEUMETHISASNGLNASPGLYLEUILECYS
6   GLYLEUARGGLN

Samples:

sample_1: Ebolavirus Fusion Loop pH 5.5, [U-13C; U-15N], 0.5-1 mM; H2O 90%; D2O 10%; sodium phosphate 30 mM; sodium chloride 50 mM

sample_2: Ebolavirus Fusion Loop pH 5.5, [U-15N], 0.5-1 mM; H2O 90%; D2O 10%; sodium phosphate 30 mM; sodium chloride 50 mM

sample_conditions_1: ionic strength: 50 mM; pH: 5.5; pressure: 1 atm; temperature: 273 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_2isotropicsample_conditions_1
2D 1H-13C HSQC aliphaticsample_1isotropicsample_conditions_1
2D 1H-13C HSQC aromaticsample_1isotropicsample_conditions_1
3D HNCAsample_1isotropicsample_conditions_1
3D HN(CO)CAsample_1isotropicsample_conditions_1
3D HNCACBsample_1isotropicsample_conditions_1
3D HNCOsample_1isotropicsample_conditions_1
3D 1H-15N NOESYsample_1isotropicsample_conditions_1
3D 1H-13C NOESYsample_1isotropicsample_conditions_1
3D 1H-13C NOESY aliphaticsample_1isotropicsample_conditions_1
3D 1H-13C NOESY aromaticsample_1isotropicsample_conditions_1

Software:

CNS, Brunger A. T. et.al. - refinement

NMR spectrometers:

  • Bruker DRX 800 MHz
  • Bruker DRX 600 MHz
  • Varian NMRS 600 MHz

Related Database Links:

BMRB 17639 19383
PDB
GB AAA96744 AAB37095 AAB81004 AAC54887 AAC57989
REF NP_066246
SP O11457 P87666 Q05320
AlphaFold O11457 P87666 Q05320

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