BMRB Entry 17072

Name: Solution NMR structure of the chromobox protein 7 with H3K9me3
Published: 2010-08-18

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PDB ID: 2l12
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full
BMRB Entry DOI: doi:10.13018/BMR17072
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Nicholas Rego and David Koes
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution NMR structure of the chromobox protein 7 with H3K9me3

Deposition date:

2010-07-22

Original release date:

2010-08-18

Authors:

Kaustov, Lilia; Lemak, Alexander; Gutmanas, Aleksandras; Fares, Christophe; Quang, Hui; Loppnau, Peter; Min, Jinrong; Edwards, Al; Arrowsmith, Cheryl

Citation:

Citation: Kaustov, Lilia; Ouyang, Hui; Amaya, Maria; Lemak, Alexander; Nady, Nataliya; Duan, Shili; Wasney, Gregory; Li, Zhihong; Vedadi, Masoud; Schapira, Matthieu; Min, Jinrong; Arrowsmith, Cheryl. "Recognition and specificity determinants of the human cbx chromodomains." J. Biol. Chem. 286, 521-529 (2011).
PubMed: 21047797

Assembly members:

Assembly members:
Cbx7, polymer, 56 residues, 6816.929 Da.
H3K9me3, polymer, 15 residues, 1607.892 Da.

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET28a-mhl

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Cbx7: GEQVFAVESIRKKRVRKGKV EYLVKWKGWPPKYSTWEPEE HILDPRLVMAYEEKEE
H3K9me3: ARTKQTARXSTGGKA

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1
spectral_peak_list

Data type	Count
13C chemical shifts	251
15N chemical shifts	44
1H chemical shifts	441

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Cbx7	1
2	H3K9me3	2

Entities:

Entity 1, Cbx7 56 residues - 6816.929 Da.

1

GLY

GLU

GLN

VAL

PHE

ALA

VAL

GLU

SER

ILE

2

ARG

LYS

ARG

VAL

ARG

LYS

GLY

LYS

VAL

3

GLU

TYR

LEU

VAL

LYS

TRP

LYS

GLY

TRP

PRO

4

PRO

LYS

TYR

SER

THR

TRP

GLU

PRO

GLU

5

HIS

ILE

LEU

ASP

PRO

ARG

LEU

VAL

MET

ALA

6

TYR

GLU

LYS

GLU

Entity 2, H3K9me3 15 residues - 1607.892 Da.

X = N-TRIMETHYLLYSINE

1

ALA

ARG

THR

LYS

GLN

THR

ALA

ARG

M3L

SER

2

THR

GLY

LYS

ALA

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HNCA	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HBHA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_1	isotropic	sample_conditions_1
3D (H)CCH-TOCSY	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY	sample_1	isotropic	sample_conditions_1
13C/15N-filtered/edited NOESY	sample_1	isotropic	sample_conditions_1
3D aro 1H-13C NOESY	sample_1	isotropic	sample_conditions_1

BMRB	15674 16778 17079
PDB	2K1B 2KVM 2L12 2L1B 4MN3 4X3K 4X3S 4X3T 4X3U
DBJ	BAI46775
GB	AAH21398 AAH51773 AAH62392 AAR26721 AAX94038
REF	NP_001179547 NP_001247702 NP_659060 NP_783640 NP_954548
SP	O95931 P60889 Q8VDS3
TPG	DAA29144
AlphaFold	O95931 P60889 Q8VDS3 P17320

BMRB Entry 17072

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

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