BMRB Entry 15567

Name: Structure of the second PDZ domain of NHERF-1
Published: 2009-05-28

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PDB ID: 2jxo
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR15567
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Structure of the second PDZ domain of NHERF-1

Deposition date:

2007-11-27

Original release date:

2009-05-28

Authors:

Cheng, Hong; Li, Jianquan; Dai, Zhongping; Bu, Zimei; Roder, Heinrich

Citation:

Citation: Cheng, Hong; Li, Jianquan; Ruzaliya, Fazlieva; Dai, Zhongping; Bu, Zimei; Roder, Heinrich. "Autoinhibitory interactions between the PDZ2 and C-terminal domains in the scaffolding protein NHERF-1" Structure 17, 660-669 (2009).
PubMed: 19446522

Assembly members:

Assembly members:
PDZ2, polymer, 98 residues, 10731 Da.

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo Sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET 151/D-TOPO/PDZ2

Entity Sequences (FASTA):

Entity Sequences (FASTA):
PDZ2: GIDPFTMLRPRLCTMKKGPS GYGFNLHSDKSKPGQFIRSV DPDSPAEASGLRAQDRIVEV NGVCMEGKQHGDVVSAIRAG GDETKLLVVDRETDEFFK

Data sets:

assigned_chemical_shifts
- NHERF_PDZ2_chem_shift_list

Data type	Count
13C chemical shifts	340
15N chemical shifts	90
1H chemical shifts	569

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	entity	1

Entities:

Entity 1, entity 98 residues - 10731 Da.

1

GLY

ILE

ASP

PRO

PHE

THR

MET

LEU

ARG

PRO

2

ARG

LEU

CYS

THR

MET

LYS

GLY

PRO

SER

3

GLY

TYR

GLY

PHE

ASN

LEU

HIS

SER

ASP

LYS

4

SER

LYS

PRO

GLY

GLN

PHE

ILE

ARG

SER

VAL

5

ASP

PRO

ASP

SER

PRO

ALA

GLU

ALA

SER

GLY

6

LEU

ARG

ALA

GLN

ASP

ARG

ILE

VAL

GLU

VAL

7

ASN

GLY

VAL

CYS

MET

GLU

GLY

LYS

GLN

HIS

8

GLY

ASP

VAL

SER

ALA

ILE

ARG

ALA

GLY

9

GLY

ASP

GLU

THR

LYS

LEU

VAL

ASP

10

ARG

GLU

THR

ASP

GLU

PHE

LYS

Name	Sample	Sample state	Sample conditions
2D 1H-1H TOCSY	sample_1	anisotropic	sample_conditions_1
2D 1H-1H NOESY	sample_1	anisotropic	sample_conditions_1
2D 1H-15N HSQC	sample_2	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_2	isotropic	sample_conditions_1
3D 1H-15N TOCSY	sample_2	isotropic	sample_conditions_1
3D HNHA	sample_2	isotropic	sample_conditions_1
3D HNCO	sample_3	isotropic	sample_conditions_1
3D HNCACB	sample_3	isotropic	sample_conditions_1
3D HN(COCA)CB	sample_3	isotropic	sample_conditions_1
3D HCCH-COSY	sample_3	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_3	isotropic	sample_conditions_1
3D 1H-13C NOESY	sample_3	isotropic	sample_conditions_1

BMRB	16637 16638 18826
PDB	2JXO 2KJD 2KRG 2M0V 2OZF 4Q3H
DBJ	BAG54683
GB	EAW89189 EHH58322

BMRB Entry 15567

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

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