BMRB Entry 11081

Name: Solution structure of the human DDEF1 SH3 domain
Published: 2011-05-19

Click here to enlarge.

PDB ID: 2rqt
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11081
MolProbity Validation Chart

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title:

Solution structure of the human DDEF1 SH3 domain

Deposition date:

2009-12-14

Original release date:

2011-05-19

Authors:

Kaieda, Shuji; Matsui, Chiyuki; Mimori-Kiyosue, Yuko; Ikegami, Takahisa

Citation:

Citation: Kaieda, Shuji; Matsui, Chiyuki; Mimori-Kiyosue, Yuko; Ikegami, Takahisa. "Structural basis of the recognition of the SAMP motif of adenomatous polyposis coli by the Src-homology 3 domain." Biochemistry 49, 5143-5153 (2010).
PubMed: 20509626

Assembly members:

Assembly members:
DDEF1 SH3, polymer, 61 residues, 7066.874 Da.

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET32a

Entity Sequences (FASTA):

Entity Sequences (FASTA):
DDEF1 SH3: VRRVKTIYDCQADNDDELTF IEGEVIIVTGEEDQEWWIGH IEGQPERKGVFPVSFVHILS D

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	279
15N chemical shifts	60
1H chemical shifts	423

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	DDEF1 SH3	1

Entities:

Entity 1, DDEF1 SH3 61 residues - 7066.874 Da.

1

VAL

ARG

VAL

LYS

THR

ILE

TYR

ASP

CYS

2

GLN

ALA

ASP

ASN

ASP

GLU

LEU

THR

PHE

3

ILE

GLU

GLY

GLU

VAL

ILE

VAL

THR

GLY

4

GLU

ASP

GLN

GLU

TRP

ILE

GLY

HIS

5

ILE

GLU

GLY

GLN

PRO

GLU

ARG

LYS

GLY

VAL

6

PHE

PRO

VAL

SER

PHE

VAL

HIS

ILE

LEU

SER

7

ASP

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_2	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_2	isotropic	sample_conditions_1
3D HNCO	sample_2	isotropic	sample_conditions_1
3D HN(CA)CO	sample_2	isotropic	sample_conditions_1
3D H(CCO)NH	sample_2	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_3	isotropic	sample_conditions_1
3D 15N-edited NOESY	sample_1	isotropic	sample_conditions_1
3D 13C-edited NOESY	sample_3	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_4	isotropic	sample_conditions_1
2D 1H-13C CT-HSQC	sample_4	isotropic	sample_conditions_1

BMRB	11082 11153
PDB	2ED1 2RQT 2RQU
DBJ	BAA86563 BAC65759 BAE27250 BAE34783
EMBL	CAD97831
GB	AAB82338 AAC98349 AAC98350 AAH02201 AAH48818
REF	NP_001037710 NP_001234925 NP_001263390 NP_001263391 NP_001263392
SP	Q1AAU6 Q9QWY8 Q9ULH1
AlphaFold	Q1AAU6 Q9QWY8 Q9ULH1

BMRB Entry 11081

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links: